Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0803
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.1  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    27   2.6  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   5.9  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   7.8  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 166  QLDQAMSNNETLTERHLHNLFWFNK*K*EVINLYKWY 56
            QLD A+S N +L ER   NL++ +  K E +  Y  Y
Sbjct: 1393 QLDNALSRNCSLFERERQNLYYSDNQKLEDLLFYASY 1429


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 638 IDFILQFNNVTNIIVFVLQTNIVVTAFPSYSSIL*CMIYDSFTILTTIVYV 486
           ID++  F  VT I   V+  N+   AFP  S ++  ++  S  IL    +V
Sbjct: 223 IDYLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWV 273


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 594 IRFANEHSRHSIPFLFQHSIVHDL*FFHHSNDYRVCTRRKRNETEQPLLRTS 439
           I + N++   +    +QHS VHD  F H +N +   + R  +++  P++R S
Sbjct: 319 IHYINDNDPSNSYSSYQHSHVHD--FIHKNNTH---SNRVLSQSSGPIVRPS 365


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +2

Query: 149 HSLI*--LTCSLSIYKTIYIST 208
           HSL+   LTC L IYK I+ ST
Sbjct: 341 HSLLGQLLTCGLEIYKAIHTST 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,054
Number of Sequences: 5004
Number of extensions: 55454
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)