Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0803
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    28   5.5  

>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = -1

Query: 680 LSTYIPLMKIL*LNIDFILQFNNVTNIIVFVLQTNIVVTAFPSYSSIL*CMIYDSFTILT 501
           L   +  + ++ ++ DF+L F    N I +  + N+   +  SY  IL   +     +LT
Sbjct: 140 LLNLVKKLNVVLISKDFLLLFLCYLNSIQYFSENNL--QSLLSYYMILLLFLNIVLPLLT 197

Query: 500 TIVYVPVANEMRLNS 456
            ++Y+PV    R NS
Sbjct: 198 PLIYIPVMIVTRKNS 212


>Z81517-3|CAB04210.1|  802|Caenorhabditis elegans Hypothetical
           protein F28B1.3 protein.
          Length = 802

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 262 CDVFQLIISG*DLLTICKV*IE*EKRFLS*IFIPDIYVASSCFNLDVPRF 411
           CD+ Q +++  +L T+  +  + E  ++    I D+YV  S FN  +  F
Sbjct: 748 CDILQFLVNNSELTTVFSIQYDFEDMWV----IDDVYVRKSFFNFQIISF 793


>AF026208-3|AAB71267.3|  903|Caenorhabditis elegans Hypothetical
           protein F52D1.1 protein.
          Length = 903

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 549 FQHSIVHDL*FFH-HSNDYRVCTRRKRNETEQPLLRTSFF 433
           F+H  VH++  FH HS+ +     R  NE    +L  SFF
Sbjct: 518 FEHRDVHNVYGFHQHSSTFEGLKARSNNEVRPFVLSRSFF 557


>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 635 DFILQFNNVTNIIVFVLQTNI-VVTAFPSYSSIL*CMIYDSFTI 507
           +++LQF+N+TNI ++ +   I +V A  ++  +   +++   TI
Sbjct: 170 EYLLQFSNLTNIAIYDISIWILIVCAISAFGGVSCILLFSYITI 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,398,742
Number of Sequences: 27780
Number of extensions: 294644
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)