Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0800
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...   102   6e-23
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    61   1e-10
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    33   0.052
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    27   2.0  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    27   2.6  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.9  

>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score =  102 bits (244), Expect = 6e-23
 Identities = 45/50 (90%), Positives = 47/50 (94%)
 Frame = +1

Query: 52  LPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 201
           LPNAMNAAEITDKLGLHSLR+R WYIQATCATSGDGLYEGL+WLS  LKN
Sbjct: 130 LPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +2

Query: 2   EDELRDAVLLIFANKQD 52
           EDELRDA+LL+FANKQD
Sbjct: 113 EDELRDALLLVFANKQD 129


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 29/60 (48%), Positives = 36/60 (60%)
 Frame = +1

Query: 19  CSTFDLCE*TGLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 198
           C    L     LP A++ A+ITD L L  L++R W +Q TCA +GDGL EGL WLS   K
Sbjct: 123 CLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAK 182



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 8   ELRDAVLLIFANKQD 52
           E+RD +LL+ ANKQD
Sbjct: 119 EMRDCLLLVLANKQD 133


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = +1

Query: 61  AMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 198
           A+++ EI+  L +   ++ +W I +  A +G  + + + WL+N LK
Sbjct: 132 ALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLK 177


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 406 LKYCFSKYYINYVYLNAINGMQINSVQ 486
           L YC   Y+INY+  ++IN   ++ +Q
Sbjct: 33  LSYCCVSYFINYLDRSSINNAYLSGMQ 59


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 36  LRINRIAKRNERSRDNRQTGSAFAAQP*LVHPSDMRHFRRRTVRGSRLAL 185
           +RIN +   N+     R +G A A      H SD+R   +  V GS  ++
Sbjct: 167 IRINILPNGNDNFIKKRNSGFALAPIACYNHTSDLRKLLKHKVTGSNASI 216


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 170 PSYSPSPEVAHVAWMYQL 117
           P+ SP PEV+H  W+  L
Sbjct: 16  PNSSPDPEVSHKLWVSSL 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,467
Number of Sequences: 5004
Number of extensions: 61506
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)