Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0799
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 27 2.4
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 26 4.3
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 26 4.3
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 26 4.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 4.3
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 25 7.5
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 7.5
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 25 9.9
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|... 25 9.9
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 9.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.9
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 25 9.9
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 133 NQVKNTNCRPDMEFGFT*PTRVRPTCEKTLEFIETP 240
N+V+N RP GF T +R ++ LE+++ P
Sbjct: 189 NEVENHGYRPTYSDGFNFDTTLREKKDRILEWLDLP 224
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 504 VGCGSGLLEWMLQKATGISVTGIEVDGAWWHCKYAPPTFIPLIVTSP 644
+G GS W+L K GI +D A W K+ P + ++ +P
Sbjct: 49 LGKGSFKYAWVLDKLKAERERGITIDIALW--KFETPKYNVTVIDAP 93
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 504 VGCGSGLLEWMLQKATGISVTGIEVDGAWWHCKYAPPTFIPLIVTSP 644
+G GS W+L K GI +D A W K+ P + ++ +P
Sbjct: 49 LGKGSFKYAWVLDKLKAERERGITIDIALW--KFETPKYNVTVIDAP 93
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 504 VGCGSGLLEWMLQKATGISVTGIEVDGAWWHCKYAPPTFIPLIVTSP 644
+G GS W+L K GI +D A W K+ P + ++ +P
Sbjct: 49 LGKGSFKYAWVLDKLKAERERGITIDIALW--KFETPKYNVTVIDAP 93
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 522 LLEWMLQKATGISVTGIEVDGAWWHCK 602
+LEWM ++ +T ++ W+HCK
Sbjct: 225 VLEWMKRREEEKFLTSNDLPPLWYHCK 251
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/78 (21%), Positives = 39/78 (50%)
Frame = +2
Query: 173 SASPDLPEFAQPVRKRWNSLKHQYDRIQPYIQSLYRRLKFKKNKSVFFQMEESMTEVVLK 352
S + +P+F P +N+L+ +++ PY ++++ F+KN F+++ E++ +
Sbjct: 39 STAAGIPDFRSPETGIYNNLQ-RFNL--PYAEAVFDLSYFRKNPRPFYELAH---ELMPE 92
Query: 353 LYRLGKWKEIVEKYHDHK 406
YR + HD +
Sbjct: 93 KYRPTYTHYFIRLLHDKR 110
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 348 RTTSVIDSSIWKKTLLFFLNLSRL 277
R+ + DSSI+ LLFFL RL
Sbjct: 205 RSIKLFDSSIFSDYLLFFLQKERL 228
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 495 VASVGCGSGLLEWMLQKATGISVTGIEV 578
V VGCG+G+L +A V G+++
Sbjct: 58 VLDVGCGTGILSMFCARAGAKHVYGVDM 85
>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
Met9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 603
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -3
Query: 559 EIPVAF-WSIHSSRPLPQPTLATPCTFKFFKTFLQELEIVFTGKY-PQ*FISVLVIVIFL 386
EIP A W + +R + QPT+ +F +K L + + Y P L++ +
Sbjct: 503 EIPNAVTWGVFPNREIIQPTIVESTSFLAWKDEAYSLGMEWANAYSPDSISRKLLVSMMK 562
Query: 385 HYFL 374
+FL
Sbjct: 563 EWFL 566
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = +2
Query: 368 KWKEIVE--KYHDHKDRNKLLWV--FPSEDNFEFLKECLKEF 481
K++E+V+ + H H K+L FP EDN L E + F
Sbjct: 233 KYEELVKFHRSHYHPSNAKILSYGSFPLEDNLSALSETFRPF 274
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 583 PSTSIPVTEIPVAFWSIHSSRPLP---QPTLATPCT 485
P TS PVT P+A + +S +P P +TP T
Sbjct: 434 PYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLT 469
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = -1
Query: 336 VIDSSIWKKTLLFFLNLSRLYNDCMYGCILSYWCFNEFQRFL 211
++++ +WK+ L+ ++ L + +Y C F F R L
Sbjct: 106 LLNAYVWKRGALYVQGMNVLASPFLYACKSENQAFQFFDRLL 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,794
Number of Sequences: 5004
Number of extensions: 71468
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -