Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0799
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 34 0.079
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 33 0.14
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 33 0.14
U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone... 32 0.32
AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek (dictyo... 31 0.56
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 31 0.56
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF016662-8|AAB66061.2| 234|Caenorhabditis elegans Hypothetical ... 29 3.0
Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical pr... 27 9.1
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 27 9.1
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 34.3 bits (75), Expect = 0.079
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -1
Query: 348 RTTSVIDSSIWKKTLLFFLNLSRLYNDCMYGCILSYWC-----FNEFQRFLTGWANSGRS 184
R + +I S IW+K + LS+LYN MY LS +C F L +A SGR+
Sbjct: 6841 RISKLIPSKIWQK----LVGLSKLYNTTMYNLALSVFCDAVRSFTGQADILLAYAISGRN 6896
Query: 183 GEAEFHIG 160
+ IG
Sbjct: 6897 ADNSELIG 6904
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 33.5 bits (73), Expect = 0.14
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Frame = +2
Query: 239 QYDRIQPYIQSLYRRLKFKKNKSVFFQME-ESMTEVVLKLYRLGKWKEIVEKYHDHKDRN 415
Q DR I + L NK+V + M + + L+R + K++ E Y+
Sbjct: 434 QVDRSAELISKHFHTLLHSSNKNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAK 493
Query: 416 KLLWVFPSEDNFEFLKECLKEFKCTRSCQCRLWEWPARMDAPESYRYFCNRY-----RSR 580
+L + + E + C + +C + +L MDA E+Y N+Y + +
Sbjct: 494 RLFLERSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFNQYLEHMNKEK 553
Query: 581 RSMVAL*IRSTHFYTFDCY 637
+ A I ++ T+D Y
Sbjct: 554 ANFTARVITPEYWPTYDTY 572
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 33.5 bits (73), Expect = 0.14
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Frame = +2
Query: 239 QYDRIQPYIQSLYRRLKFKKNKSVFFQME-ESMTEVVLKLYRLGKWKEIVEKYHDHKDRN 415
Q DR I + L NK+V + M + + L+R + K++ E Y+
Sbjct: 471 QVDRSAELISKHFHTLLHSSNKNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAK 530
Query: 416 KLLWVFPSEDNFEFLKECLKEFKCTRSCQCRLWEWPARMDAPESYRYFCNRY-----RSR 580
+L + + E + C + +C + +L MDA E+Y N+Y + +
Sbjct: 531 RLFLERSASVDAEKMVLCKLKTECGSAFTYKLEGMFKDMDASENYGRLFNQYLEHMNKEK 590
Query: 581 RSMVAL*IRSTHFYTFDCY 637
+ A I ++ T+D Y
Sbjct: 591 ANFTARVITPEYWPTYDTY 609
>U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform b protein.
Length = 576
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 616 VGGAYLQCHHAPSTSIPVTEIPVAFWSIHSSRPLPQPTLATPCTFKFFKTF 464
V A Q +PS+++PV P ++ S+ P+P T A+P F +F
Sbjct: 22 VSAALHQQQSSPSSNLPVIPSPTDMITVTSTSPIPITTSASPPNLPMFLSF 72
>AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform b protein.
Length = 849
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/81 (25%), Positives = 42/81 (51%)
Frame = +2
Query: 206 PVRKRWNSLKHQYDRIQPYIQSLYRRLKFKKNKSVFFQMEESMTEVVLKLYRLGKWKEIV 385
PV + + ++Y+ I + L+ ++ + + + + E+ EVV + + +KEI
Sbjct: 515 PVMECFRKNGNRYNIINSSVLHLFEFVRSEDVRPLIKYVVENHMEVVDSVNYVKTFKEIK 574
Query: 386 EKYHDHKDRNKLLWVFPSEDN 448
+Y H+DR + + V SEDN
Sbjct: 575 IRYDQHRDREETMSV-RSEDN 594
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 31.5 bits (68), Expect = 0.56
Identities = 21/81 (25%), Positives = 42/81 (51%)
Frame = +2
Query: 206 PVRKRWNSLKHQYDRIQPYIQSLYRRLKFKKNKSVFFQMEESMTEVVLKLYRLGKWKEIV 385
PV + + ++Y+ I + L+ ++ + + + + E+ EVV + + +KEI
Sbjct: 751 PVMECFRKNGNRYNIINSSVLHLFEFVRSEDVRPLIKYVVENHMEVVDSVNYVKTFKEIK 810
Query: 386 EKYHDHKDRNKLLWVFPSEDN 448
+Y H+DR + + V SEDN
Sbjct: 811 IRYDQHRDREETMSV-RSEDN 830
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 104 TSKCGKSGKHRQNICSGKPDCQLSNDHATYVH 9
++ CG K RQ +C DCQ N+ + + +
Sbjct: 616 SASCGSGMKRRQRVCQFGTDCQGPNEESQFCY 647
>AF016662-8|AAB66061.2| 234|Caenorhabditis elegans Hypothetical
protein C33C12.9 protein.
Length = 234
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 495 VASVGCGSGLLEWMLQKATGISVTGIEVD 581
V +GCGSG++ + +A G +VT + D
Sbjct: 60 VLEIGCGSGVVSTFVNQALGGNVTSVATD 88
>Z36752-5|CAA85328.2| 533|Caenorhabditis elegans Hypothetical
protein F35H8.6 protein.
Length = 533
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +3
Query: 519 GLLEWMLQKATGI--SVTGIEVDGAWWHCKYAPPTFIPLIVT 638
G+L L+K+ I S+TG+ + AW + +PP+++P+ T
Sbjct: 149 GVLMAGLKKSVYIYWSMTGLRTESAWANQSPSPPSYLPVAGT 190
>Z46242-3|CAA86338.2| 680|Caenorhabditis elegans Hypothetical
protein F35G12.4b protein.
Length = 680
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 319 NGRIYDGGGPKVIQTWEMEGNSGEISRSQG 408
NGR++ GG +I+TW + + S G
Sbjct: 41 NGRLFTGGSDTIIRTWSVPHHKDAFSARGG 70
>Z46242-2|CAA86335.2| 683|Caenorhabditis elegans Hypothetical
protein F35G12.4a protein.
Length = 683
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 319 NGRIYDGGGPKVIQTWEMEGNSGEISRSQG 408
NGR++ GG +I+TW + + S G
Sbjct: 41 NGRLFTGGSDTIIRTWSVPHHKDAFSARGG 70
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 98 KCGKSGKHRQNICSGKPDCQLSND 27
KCGK+ +C G PDC +D
Sbjct: 260 KCGKNCIKASKVCDGIPDCDDGSD 283
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,480,090
Number of Sequences: 27780
Number of extensions: 404245
Number of successful extensions: 1220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -