Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0799
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.49 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.1  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.6  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   8.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   8.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 583 PSTSIPVTEIPVAFWSIHSSRPLPQPTLATPCTFKFFKTFL 461
           P    P   +PV++ S   +  +  P + TP T   +K FL
Sbjct: 822 PPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYKPFL 862


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 504 VGCGSGLLEWMLQKATGISVTGIEVDGAWWHCKYAPPTFIPLIVTSP 644
           +G GS    W+L K       GI +D A W  K+    +   I+ +P
Sbjct: 49  MGKGSFKYAWVLDKLKAERERGITIDIALW--KFETAKYYVTIIDAP 93


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 504 VGCGSGLLEWMLQKATGISVTGIEVDGAWWHCKYAPPTFIPLIVTSP 644
           +G GS    W+L K       GI +D A W  K+    +   I+ +P
Sbjct: 49  MGKGSFKYAWVLDKLKAERERGITIDIALW--KFETSKYYVTIIDAP 93


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 194 EFAQPVRKRWNSLKHQYDRIQPYIQSLYRRLKFKKNKSVFFQMEESMTEVVLKL----YR 361
           E+A  V K  + L  ++ +I      L+   K+ KN+    ++   +T+ V++L    Y+
Sbjct: 208 EYAMAVMKMCDILHLRHTKIWLRPDWLFNLTKYGKNQIKLLEIIHGLTKKVIQLKKEEYK 267

Query: 362 LGK 370
            GK
Sbjct: 268 SGK 270


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 139 LDFN*I*LTRYKLLNVENLVNIVKIFVRESQIAS 38
           +DFN I +     +NVE++   V +FVR+S I S
Sbjct: 13  VDFN-IFVADINSINVEDMDFRVDMFVRQSWIES 45


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 215 KRWNSLKHQYDRIQPYIQSLYRRLKFKKN 301
           K W  L  +YD    Y +     L+F KN
Sbjct: 96  KDWERLSAKYDSTGEYKKRYEHGLQFAKN 124


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 215 KRWNSLKHQYDRIQPYIQSLYRRLKFKKN 301
           K W  L  +YD    Y +     L+F KN
Sbjct: 96  KDWERLSAKYDSTGEYKKRYEHGLQFAKN 124


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 44  NLAFPNKYFDDVY 82
           N   PN YF DV+
Sbjct: 662 NFTIPNMYFKDVF 674


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 44  NLAFPNKYFDDVY 82
           N   PN YF DV+
Sbjct: 662 NFTIPNMYFKDVF 674


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,248
Number of Sequences: 438
Number of extensions: 5389
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)