Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0797
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 67 2e-12
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 28 0.97
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 1.7
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 27 3.0
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 3.0
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 26 3.9
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.2
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 9.1
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 9.1
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 9.1
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 25 9.1
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 9.1
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 25 9.1
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 9.1
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 67.3 bits (157), Expect = 2e-12
Identities = 39/92 (42%), Positives = 47/92 (51%)
Frame = +1
Query: 7 FQSQGTFLVNSAAHLWGYKPYDKSLKATQSGMANAFTFGEGFHNYHHVFPWDYRADELGD 186
F TF VNS AHL G +P+D + A + T GEG HNYHH FP DYR
Sbjct: 242 FVHHATFCVNSLAHLIGSQPFDDTNSARNHFITALVTLGEGNHNYHHAFPNDYRNGLRWY 301
Query: 187 RYINLTTRFIDFFAWMGWAYDLKTASTNIIEK 282
Y + T FI + G AY+L T N I+K
Sbjct: 302 EY-DPTKIFIYIASLFGLAYNLNTFPDNEIQK 332
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 28.3 bits (60), Expect = 0.97
Identities = 9/38 (23%), Positives = 20/38 (52%)
Frame = -2
Query: 255 FQIISPSHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVM 142
++ ++ PCK + P C I ++CP ++N++
Sbjct: 51 YEPVTCKAPCKAVLNPYCHIDTRAKFWICPFCLQRNML 88
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 27.5 bits (58), Expect = 1.7
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -2
Query: 201 QIYVPVPQFVCPIIPRKNVMVIVKSFTKSKCICHATLSSFQALIVRFVSPQMSSAIYQKS 22
QI++P+ + C ++ T + I A + +QA++ R+VS ++AI QK
Sbjct: 1492 QIFLPLLENFCLGNDTVQTLLDESVITIGEIIKWAHWNQYQAILKRYVSLLKNNAIDQKV 1551
Query: 21 ALRL 10
+RL
Sbjct: 1552 VVRL 1555
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = -2
Query: 276 NNIGGSS-FQIISPSHPCKE 220
NNI F +I P HPCKE
Sbjct: 414 NNIADDDLFDVILPKHPCKE 433
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +3
Query: 288 TKNRGWDLQTTKWNELKQSSKSFFA*YHFFDDFCKVIQKQASGISY 425
TK++ W +W+++ + + A F D +C++ + G+SY
Sbjct: 638 TKDQEWRRSKREWSKIWRQIEKKNAQAAFDDRYCRIEGRDRRGLSY 683
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 26.2 bits (55), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +1
Query: 97 GMANAFTFGEGFHNYHHVFPW 159
G N F + G+H HH FP+
Sbjct: 278 GPLNFFVYNAGYHIEHHDFPY 298
>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 73 KSLKATQSGMANAFTFGEGFHNYHHVFPWDYRA 171
K+L + +A + +GFH+Y F W+++A
Sbjct: 148 KTLSISNRPLALCRIYVDGFHSYMFQFVWNHQA 180
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = -2
Query: 198 IYVPVPQFVCPIIPRKNVMVIVKSFTKSKCICHATLSSFQALIV 67
+Y +P + ++P ++ F K K +A L++FQ L +
Sbjct: 189 LYNGLPATLLNVVPYVSICFFTFEFCKQKFFSNADLTAFQKLFL 232
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 556 WVIKGTLLYLHKRVKFPSFVTVILL 630
WVI T+L +++F +F+ ILL
Sbjct: 134 WVIFSTILTKRAKIEFSTFLPTILL 158
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 556 WVIKGTLLYLHKRVKFPSFVTVILL 630
WVI T+L +++F +F+ ILL
Sbjct: 134 WVIFSTILTKRAKIEFSTFLPTILL 158
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -2
Query: 366 ITQRSFLKTVSIHSIWSFVSPIPCS*CPLLNNIGGSSFQII 244
+ S ++ I+S+ +F S + CS C L +GG S ++
Sbjct: 313 VMHMSIVQVGFINSVKTFGSLLTCSVCLFLTYVGGFSVHMM 353
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 556 WVIKGTLLYLHKRVKFPSFVTVILL 630
WVI T+L +++F +F+ ILL
Sbjct: 134 WVIFSTILTKRAKIEFSTFLPTILL 158
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 543 EFDLKLIKKCISLN*YNKTQYKNYQQKLRK 454
++D+K I+K SL+ Y + NY +K +K
Sbjct: 251 DWDIKKIQKDYSLDVYGAIRVINYSRKTKK 280
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 556 WVIKGTLLYLHKRVKFPSFVTVILL 630
WVI T+L +++F +F+ ILL
Sbjct: 134 WVIFSTILTKRAKIEFSTFLPTILL 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,828
Number of Sequences: 5004
Number of extensions: 52847
Number of successful extensions: 116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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