Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0796
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0695 + 5730932-5731198 31 1.1
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 29 2.5
05_04_0286 + 19833114-19834053,19834149-19834165 29 2.5
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 3.3
08_02_0512 + 18012909-18013025,18013656-18013751,18014102-180143... 29 4.3
02_02_0170 + 7395480-7395917 29 4.3
08_01_0433 + 3794440-3794948,3795696-3796707 28 5.7
05_06_0051 - 25190803-25191216,25191301-25191891,25193248-251933... 28 5.7
06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560 28 7.5
04_03_1035 - 21887562-21890030 28 7.5
03_02_0883 - 12142550-12142663,12142723-12142782,12142954-12143229 28 7.5
02_01_0172 - 1187408-1187851 28 7.5
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 27 9.9
>11_01_0695 + 5730932-5731198
Length = 88
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 360 ACVRRGGNCDHRPGDCCHSSSCRCNL---WGSNC 452
AC+ GG C RP DCC + C + +GS C
Sbjct: 53 ACLPAGGFCMFRPMDCCGNCGCLYPVGVCYGSRC 86
>06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 636 GLCEGIERENKNATGPFCVGECCGFRWSGGQ--VGWLELVAASEELRS 499
G C G +ENKN T PF + WSG + ++E + S+E S
Sbjct: 888 GSCSGENKENKNNTSPF-----SSYSWSGQRKVPSYIEKIVFSQEFIS 930
>05_04_0286 + 19833114-19834053,19834149-19834165
Length = 318
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 351 FRRACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRC 458
F AC GG C H GD H C C W S C
Sbjct: 251 FCGACRATGGVCGH-DGDS-HGDLCLCGDWNSTSNC 284
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 237 YIDP-GDDDLEVNLPDYGEDPADLQLLQD 320
+++P D+ +E PDY EDP +++L +D
Sbjct: 1193 HVEPVADEKMEDEEPDYEEDPEEVELYED 1221
>08_02_0512 +
18012909-18013025,18013656-18013751,18014102-18014389,
18014551-18014750,18015313-18015548,18015809-18015951,
18016059-18016130,18016231-18016458
Length = 459
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 332 IVADLRFQACLCAARRQLRPSTGR 403
+ A L F C C R LRPS GR
Sbjct: 1 MAAALAFPTCCCCRRPSLRPSAGR 24
>02_02_0170 + 7395480-7395917
Length = 145
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = -1
Query: 630 CEGIERENKNATGPF--CVGEC-CGFRWSGGQVGWLELVAASEELRSLSPTPTSGRA 469
C G R + G C G CG RW Q G +E V A+E + + T+ RA
Sbjct: 3 CGGWVRPRRRVAGGGVRCRGTIGCGRRWQAQQRGRIEAVTAAEAWEATTAGATAARA 59
>08_01_0433 + 3794440-3794948,3795696-3796707
Length = 506
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 345 YVFRRACVRRGGNCDHRPGDCCHSSSCR 428
+ RRAC RRGG C+ C S R
Sbjct: 18 HALRRACWRRGGRCEPGWRSRCEGDSAR 45
>05_06_0051 -
25190803-25191216,25191301-25191891,25193248-25193317,
25193392-25193443,25195368-25195440,25195557-25195646
Length = 429
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 530 SSQPT*PPLHRKPQHSP 580
+S P PPLHR P+H P
Sbjct: 167 ASPPVPPPLHRNPRHRP 183
>06_03_0893 - 25721576-25722205,25722366-25722443,25722628-25723560
Length = 546
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 276 ASSLPDHRLRDQYKRHEPILL 214
A +LP H +RD +RH P++L
Sbjct: 56 AGALPHHAMRDLARRHGPLML 76
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +3
Query: 396 PGDCCHSSSCRCNLW-GSNCRCQRMG 470
PG C S SC C +W GS C G
Sbjct: 327 PGPCAPSKSCSCGVWSGSAQLCAGSG 352
>03_02_0883 - 12142550-12142663,12142723-12142782,12142954-12143229
Length = 149
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 583 CWRMLWLPVERRSSRLAGVGRRFRG 509
C ++LW+ RR++RL G GRR G
Sbjct: 55 CGQLLWVLGFRRAARLGGQGRRPAG 79
>02_01_0172 - 1187408-1187851
Length = 147
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 552 GGQVGWLELVAASEELRSLSPTP 484
G GWLE A E LRSL P P
Sbjct: 123 GDAEGWLEEAIADELLRSLPPPP 145
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 501 TGAPLKRRPTPASRLDRRSTGSHNIRQHKTDPLRSYF 611
TGAP+ RP PAS +D R + N + + +F
Sbjct: 238 TGAPILPRPLPASVVDSRISEKDNDAEKENSEEEKHF 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,650,977
Number of Sequences: 37544
Number of extensions: 317861
Number of successful extensions: 990
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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