Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0796
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    28   6.7  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    28   6.7  
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    27   8.9  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
           protein 4 protein.
          Length = 2104

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 357 RACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRCQ 461
           R CV     C +   DC +++ C     G  C+C+
Sbjct: 170 RKCVESVNECTNGEADCSNNADCFDRADGYECKCR 204


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
           matrix receptor MUP-4 protein.
          Length = 2104

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 357 RACVRRGGNCDHRPGDCCHSSSCRCNLWGSNCRCQ 461
           R CV     C +   DC +++ C     G  C+C+
Sbjct: 170 RKCVESVNECTNGEADCSNNADCFDRADGYECKCR 204


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 497 NDRSSSEAATNSSQPT*PPLHR----KPQHSPTQNGPVAFL 607
           N+ S+ E   N   P+ PP  +    +PQ  PT  GP+ F+
Sbjct: 311 NECSADEMDMNDVPPSPPPYRKPAPPQPQAPPTSAGPLGFI 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,687,274
Number of Sequences: 27780
Number of extensions: 246586
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)