Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0794
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    27   3.0  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   7.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   9.3  

>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +2

Query: 446 DYVLRRCNQTDAILFDECYPDAELSALRAPIADIERHFDEGNDTDALDLHAIGNATDV 619
           DYVL+ C Q +  L DE     E+  +     +I  +   G+D   +++ A+ N+ +V
Sbjct: 224 DYVLKHCEQFEGFLLDE--ESGEVLPVSDYCNEIRNNSKWGSD---IEIQALANSLEV 276


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 220 SHSNFVFVKSLFTIHTIIVVFLMSIINLETPANITHG 110
           S+ NFV V +LF + T     L ++ N   P+N+  G
Sbjct: 523 SYVNFVSVCTLFGLETPRDALLTTLSNKAVPSNLLSG 559


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 533 PIADIERHFDEGND 574
           PI   ERHFD GND
Sbjct: 568 PIHHGERHFDSGND 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,949
Number of Sequences: 5004
Number of extensions: 51448
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)