Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0789
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    31   0.12 
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.5  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   4.7  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    26   6.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   6.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   6.1  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    25   8.1  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = -1

Query: 272 WLKLFNAAFVSVCWTLIRYLAFHFYFSFPSNHVCRM 165
           +++L+NAAF ++C  L+ + A +F +SF +  +C +
Sbjct: 143 FMRLWNAAFGTLCIPLVYFTALNFNYSFLAATLCTL 178


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 269 LKLFNAAFVSVCWTLIRYLAFHFYFSFPSNHV 174
           LKL++ A   +C    R++AFHF    P +H+
Sbjct: 138 LKLYSCAKAGIC----RWMAFHFLEQEPIDHI 165


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 248 FVSVCWTLIRYLAFHFYFSFPSN 180
           F S+ W    Y A HFY +FP N
Sbjct: 415 FESIMW----YTAIHFYLAFPDN 433


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 280 LKYC*QILKNYYNTNLLHVFTVLLSKSLSMSWPSL 384
           +KY   IL+   NTN   +FT    K+L ++WP L
Sbjct: 247 IKYLEHILRT--NTNGSKIFTKSPVKNLYLNWPQL 279


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = -3

Query: 621  ELLFCLVHFKHSQCQPVSQCRSVYSKVAKIMPEKAI*RLKYLTFGKYMKYKLY 463
            ELLFCLV+   S  QP      VY  +      K   R  YL FG+ M Y  Y
Sbjct: 865  ELLFCLVYI--SAGQPARAQEMVYWTLRN---GKYKTRELYLMFGRLMIYSRY 912


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = -3

Query: 621  ELLFCLVHFKHSQCQPVSQCRSVYSKVAKIMPEKAI*RLKYLTFGKYMKYKLY 463
            ELLFCLV+   S  QP      VY  +      K   R  YL FG+ M Y  Y
Sbjct: 865  ELLFCLVYI--SAGQPARAQEMVYWTLRN---GKYKTRELYLMFGRLMIYSRY 912


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = -2

Query: 694 IDNSN*IHGRCRKTVSSNNSSLEM*AVILFSSLQTQPMSTRLTMPQCVFKSCKNNAR 524
           IDNSN ++G      + + S + + + I    +   P+S+    P C+  +C  N R
Sbjct: 481 IDNSNYVNGDITIHPTLSRSLIPVISPITIYDVDDSPLSSVFFDPDCMI-TCATNGR 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,974
Number of Sequences: 5004
Number of extensions: 53099
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)