Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0789
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0334 - 16489768-16489796,16490588-16490936                       31   0.91 
03_05_0586 - 25875703-25876332,25876426-25876713,25877064-258771...    29   4.8  
09_02_0379 - 8210401-8210567,8210944-8213827                           28   6.4  

>11_04_0334 - 16489768-16489796,16490588-16490936
          Length = 125

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +3

Query: 558 CGIVRRVDIGCV*SELNKITAHISSELLFDETVFL----HRPCI 677
           CG VRRVD+GC+      +T  +   +  D+ V++    HRP +
Sbjct: 70  CGAVRRVDVGCL---CGMVTPEVEQYVCMDKAVYVAAYCHRPLL 110


>03_05_0586 -
           25875703-25876332,25876426-25876713,25877064-25877194,
           25877299-25877812
          Length = 520

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 1   PGLQESARGRYFITKFRPRFSSREHGR 81
           P   ES+RG + I + RPRF++R HGR
Sbjct: 260 PPFGESSRGPFNILEQRPRFANR-HGR 285


>09_02_0379 - 8210401-8210567,8210944-8213827
          Length = 1016

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -3

Query: 675 YTVGAEKPSRQITAHLKCELLFCLVHFKHSQCQPVSQCRSVYSKVAKIMPEKAI*RLKYL 496
           + +G E+   + +  LK +    +V+FK   C  +      Y  V    PEKAI  L+YL
Sbjct: 690 HNLGVEQLEGESSVSLKLKSSMSVVNFK--MCLDIETLSIEY--VDDSYPEKAIPYLEYL 745

Query: 495 TFGKYMK 475
           TF +  K
Sbjct: 746 TFWRLPK 752


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,309
Number of Sequences: 37544
Number of extensions: 300813
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)