Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0788
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   5.9  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   5.9  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   7.8  

>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 609 SILFITQHLNRPTSDIYTLICEAKTLHPFLRKLR 508
           S+ F+T+   R   D YT+I E   L   LR L+
Sbjct: 321 SLAFLTKVSKRDAPDYYTVIKEPMDLGTILRNLK 354


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 573 TSDIYTLICEAKTLHPFLRKLRGRRSMKFPTLIKNIEKECRM 448
           T++ Y   CEAKT    L KL  R   K P L+ + E   +M
Sbjct: 421 TNERYANYCEAKTATISLSKLLRRE--KIPLLVSSFESLFKM 460


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 181 NVQTYNFN*RPAPAPLGSLTKF 116
           N+QT+ FN RP  A   S ++F
Sbjct: 508 NIQTFRFNNRPTAATTTSFSQF 529


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,832
Number of Sequences: 5004
Number of extensions: 55167
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)