Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0786
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 133 9e-32
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 133 9e-32
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 133 9e-32
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 42 3e-04
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 42 3e-04
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 41 9e-04
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 32 0.30
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 32 0.30
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 32 0.30
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 32 0.30
AC024845-3|AAF60852.1| 619|Caenorhabditis elegans Hypothetical ... 30 1.6
AF022976-7|AAC69086.1| 441|Caenorhabditis elegans Hypothetical ... 29 2.1
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 28 4.9
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 28 4.9
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 28 4.9
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 28 6.5
U97401-1|AAB52466.2| 336|Caenorhabditis elegans Hypothetical pr... 27 8.6
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 27 8.6
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 27 8.6
AL034393-6|CAA22321.1| 507|Caenorhabditis elegans Hypothetical ... 27 8.6
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 27 8.6
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 27 8.6
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 133 bits (322), Expect = 9e-32
Identities = 67/134 (50%), Positives = 86/134 (64%)
Frame = +1
Query: 109 KDCVRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFL 288
KDCVRLRGLPYEA V+HI+TFL +FA + QGVHMV+N GHPSGEAFIQM +E +A
Sbjct: 388 KDCVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASA 447
Query: 289 CAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPATSPKVLSPGPLTYYYSAMGP 468
CA H+ +M+ GKK+RYIEVFQ S +++N+ G P P PL + + P
Sbjct: 448 CAAGVHNNFMSVGKKKRYIEVFQASAEELNLHHLVGQQHQVPP----PAPLG-FMGQLPP 502
Query: 469 TLPTPPLVYWGYPT 510
P P + YP+
Sbjct: 503 QAPQPQQFWSSYPS 516
Score = 51.2 bits (117), Expect = 6e-07
Identities = 36/112 (32%), Positives = 54/112 (48%)
Frame = +1
Query: 73 LVPQHVITSGTAKDCVRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEA 252
L Q V G C R RGLP++A H+ F +IV G+ + ++ G +GE
Sbjct: 169 LEDQEVGADGDNVVC-RARGLPWQASDHHVAQFFAGL--DIVPGGIALCLSSEGRRNGEV 225
Query: 253 FIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPA 408
+Q S+ S L A ++H ++ RYIEV++ D+ V TG T A
Sbjct: 226 LVQFSSQESRDL-ALKRHRNFLL----SRYIEVYKAGLDEFMHVATGSSTEA 272
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/90 (31%), Positives = 46/90 (51%)
Frame = +1
Query: 118 VRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFLCAQ 297
VR+RGLPY+ I TF E + + + G P+G+AF+Q ++E A
Sbjct: 283 VRMRGLPYDCTDAQIRTFFEPLK---LTDKILFITRTDGRPTGDAFVQFETEEDA-QQGL 338
Query: 298 QKHHRYMTFGKKQRYIEVFQCSGDDMNMVL 387
KH + + QRYIE+F+ + ++ V+
Sbjct: 339 LKHRQVI----GQRYIELFKSTAAEVQQVV 364
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 133 bits (322), Expect = 9e-32
Identities = 67/134 (50%), Positives = 86/134 (64%)
Frame = +1
Query: 109 KDCVRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFL 288
KDCVRLRGLPYEA V+HI+TFL +FA + QGVHMV+N GHPSGEAFIQM +E +A
Sbjct: 388 KDCVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASA 447
Query: 289 CAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPATSPKVLSPGPLTYYYSAMGP 468
CA H+ +M+ GKK+RYIEVFQ S +++N+ G P P PL + + P
Sbjct: 448 CAAGVHNNFMSVGKKKRYIEVFQASAEELNLHHLVGQQHQVPP----PAPLG-FMGQLPP 502
Query: 469 TLPTPPLVYWGYPT 510
P P + YP+
Sbjct: 503 QAPQPQQFWSSYPS 516
Score = 51.2 bits (117), Expect = 6e-07
Identities = 36/112 (32%), Positives = 54/112 (48%)
Frame = +1
Query: 73 LVPQHVITSGTAKDCVRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEA 252
L Q V G C R RGLP++A H+ F +IV G+ + ++ G +GE
Sbjct: 169 LEDQEVGADGDNVVC-RARGLPWQASDHHVAQFFAGL--DIVPGGIALCLSSEGRRNGEV 225
Query: 253 FIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPA 408
+Q S+ S L A ++H ++ RYIEV++ D+ V TG T A
Sbjct: 226 LVQFSSQESRDL-ALKRHRNFLL----SRYIEVYKAGLDEFMHVATGSSTEA 272
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/90 (31%), Positives = 46/90 (51%)
Frame = +1
Query: 118 VRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFLCAQ 297
VR+RGLPY+ I TF E + + + G P+G+AF+Q ++E A
Sbjct: 283 VRMRGLPYDCTDAQIRTFFEPLK---LTDKILFITRTDGRPTGDAFVQFETEEDA-QQGL 338
Query: 298 QKHHRYMTFGKKQRYIEVFQCSGDDMNMVL 387
KH + + QRYIE+F+ + ++ V+
Sbjct: 339 LKHRQVI----GQRYIELFKSTAAEVQQVV 364
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 133 bits (322), Expect = 9e-32
Identities = 67/134 (50%), Positives = 86/134 (64%)
Frame = +1
Query: 109 KDCVRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFL 288
KDCVRLRGLPYEA V+HI+TFL +FA + QGVHMV+N GHPSGEAFIQM +E +A
Sbjct: 388 KDCVRLRGLPYEATVQHIVTFLGDFATMVKFQGVHMVYNNQGHPSGEAFIQMINEQAASA 447
Query: 289 CAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPATSPKVLSPGPLTYYYSAMGP 468
CA H+ +M+ GKK+RYIEVFQ S +++N+ G P P PL + + P
Sbjct: 448 CAAGVHNNFMSVGKKKRYIEVFQASAEELNLHHLVGQQHQVPP----PAPLG-FMGQLPP 502
Query: 469 TLPTPPLVYWGYPT 510
P P + YP+
Sbjct: 503 QAPQPQQFWSSYPS 516
Score = 51.2 bits (117), Expect = 6e-07
Identities = 36/112 (32%), Positives = 54/112 (48%)
Frame = +1
Query: 73 LVPQHVITSGTAKDCVRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEA 252
L Q V G C R RGLP++A H+ F +IV G+ + ++ G +GE
Sbjct: 169 LEDQEVGADGDNVVC-RARGLPWQASDHHVAQFFAGL--DIVPGGIALCLSSEGRRNGEV 225
Query: 253 FIQMDSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGGVTPA 408
+Q S+ S L A ++H ++ RYIEV++ D+ V TG T A
Sbjct: 226 LVQFSSQESRDL-ALKRHRNFLL----SRYIEVYKAGLDEFMHVATGSSTEA 272
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/90 (31%), Positives = 46/90 (51%)
Frame = +1
Query: 118 VRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFLCAQ 297
VR+RGLPY+ I TF E + + + G P+G+AF+Q ++E A
Sbjct: 283 VRMRGLPYDCTDAQIRTFFEPLK---LTDKILFITRTDGRPTGDAFVQFETEEDA-QQGL 338
Query: 298 QKHHRYMTFGKKQRYIEVFQCSGDDMNMVL 387
KH + + QRYIE+F+ + ++ V+
Sbjct: 339 LKHRQVI----GQRYIELFKSTAAEVQQVV 364
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 42.3 bits (95), Expect = 3e-04
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Frame = +1
Query: 118 VRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFLCAQ 297
VRLRGLP+ I FL IV G+ + P GEA++ ++ S + A+
Sbjct: 125 VRLRGLPFSVTSRDISDFLAPLP--IVRDGILLPDQQRARPGGEAYVCFETMESVQI-AK 181
Query: 298 QKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGG--VTPATSPKVLSPGPLTYYYSAMGP- 468
Q+H + + RYIEVF+ + D++ P P + P T A P
Sbjct: 182 QRHMKNI----GHRYIEVFEATHRDLSRFAEENDLRVPRFGPPPFASAPQTAPRGAYDPY 237
Query: 469 TLPTPP 486
+ PT P
Sbjct: 238 SQPTDP 243
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 42.3 bits (95), Expect = 3e-04
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Frame = +1
Query: 118 VRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFLCAQ 297
VRLRGLP+ I FL IV G+ + P GEA++ ++ S + A+
Sbjct: 125 VRLRGLPFSVTSRDISDFLAPLP--IVRDGILLPDQQRARPGGEAYVCFETMESVQI-AK 181
Query: 298 QKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGG--VTPATSPKVLSPGPLTYYYSAMGP- 468
Q+H + + RYIEVF+ + D++ P P + P T A P
Sbjct: 182 QRHMKNI----GHRYIEVFEATHRDLSRFAEENDLRVPRFGPPPFASAPQTAPRGAYDPY 237
Query: 469 TLPTPP 486
+ PT P
Sbjct: 238 SQPTDP 243
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 40.7 bits (91), Expect = 9e-04
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = +1
Query: 94 TSGTAKDCVRLRGLPYEAQVEHILTF---LEEFAKNIVVQGVHMVFNAXGHPSGEAFIQM 264
++G +RLRG+P+ + + + F LE IV+ G PSGEAF++
Sbjct: 151 SNGEVNHVIRLRGVPWSCKEDDVRKFFEGLEPPPAEIVIGGTG---GPRSRPSGEAFVRF 207
Query: 265 DSEASAFLCAQQKHHRYMTFGKKQRYIEVFQCSGDDMNMVLTGG 396
++ +A A ++R+M RY+EVF S + N GG
Sbjct: 208 TTQDAAEK-AMDYNNRHM----GSRYVEVFMSSMVEFNRAKGGG 246
Score = 37.1 bits (82), Expect = 0.011
Identities = 25/85 (29%), Positives = 38/85 (44%)
Frame = +1
Query: 118 VRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFLCAQ 297
+RLRGLP+ A + I EF + ++ V V G P+GEA+++ + A +
Sbjct: 66 IRLRGLPFNATEKDI----HEFFAGLTIERVKFVCTT-GRPNGEAYVEFKNTEEAGKAME 120
Query: 298 QKHHRYMTFGKKQRYIEVFQCSGDD 372
RYIEVF D+
Sbjct: 121 NDRKEI-----SNRYIEVFTVEADE 140
Score = 35.1 bits (77), Expect = 0.043
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +1
Query: 118 VRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFLCAQ 297
V +RGLPY+A I F + V G+ N G PSG+A + D+ +
Sbjct: 327 VYMRGLPYDADDHAIAAFFSPLRCHSVKIGI----NETGRPSGDAIAEFDNYNDLQVALS 382
Query: 298 QKHHRYMTFGKKQRYIEVFQCSG 366
+ + R G+ RY+E+F G
Sbjct: 383 RNNQR---MGR--RYVELFDNRG 400
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 32.3 bits (70), Expect = 0.30
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 109 KDCVRLRGLPYEAQVEHILTFLEEFAKNIVVQGVHMVFNAXGHPSGEAFIQMDSEASAFL 288
K V +R + ++A + + +F V V V + G P G AF+ D+EASA
Sbjct: 682 KSKVFVRNVHFQATDDELKALFSKFG---TVTSVRRVTHKDGKPKGIAFVDFDTEASAQK 738
Query: 289 C 291
C
Sbjct: 739 C 739
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -1
Query: 541 GGNSEQGRLGVSGSPNIRAAGLAASVPLLNSNKSKDRGTTP--SGTSPGSRRPLAPCSCR 368
G ++ SG+ + + ++V ++ + S +TP S +SPGS +AP S
Sbjct: 127 GSSTPSASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSS 186
Query: 367 RLNTGTPRCTVVSSRRSCTGDASAG 293
+ TP + SS T S G
Sbjct: 187 TYGSSTPSASSSSSGTMSTNSGSTG 211
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -1
Query: 541 GGNSEQGRLGVSGSPNIRAAGLAASVPLLNSNKSKDRGTTP--SGTSPGSRRPLAPCSCR 368
G ++ SG+ + + ++V ++ + S +TP S +SPGS +AP S
Sbjct: 334 GSSTPSASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSS 393
Query: 367 RLNTGTPRCTVVSSRRSCTGDASAG 293
+ TP + SS T S G
Sbjct: 394 TYGSSTPSASSSSSGTMSTNSGSTG 418
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = -1
Query: 541 GGNSEQGRLGVSGSPNIRAAGLAASVPLLNSNKSKDRGTTP--SGTSPGSRRPLAPCSCR 368
G ++ SG+ + + ++V ++ + S +TP S +SPGS +AP S
Sbjct: 334 GSSTPSASSSSSGTMSTISGSTGSTVTVVPGSSSTFASSTPIASSSSPGSTVTVAPGSSS 393
Query: 367 RLNTGTPRCTVVSSRRSCTGDASAG 293
+ TP + SS T S G
Sbjct: 394 TYGSSTPSASSSSSGTMSTNSGSTG 418
>AC024845-3|AAF60852.1| 619|Caenorhabditis elegans Hypothetical
protein Y65B4BL.2 protein.
Length = 619
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 454 NSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPRCTVVSSRRSCTG 308
NS+++ TTP+G+S GSR + + + + R SSRR+ +G
Sbjct: 561 NSSRATSARTTPAGSSIGSRSSIQSRASAATSVSSNRFVGPSSRRTPSG 609
>AF022976-7|AAC69086.1| 441|Caenorhabditis elegans Hypothetical
protein R11G11.12 protein.
Length = 441
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Frame = -2
Query: 261 LNECLAAGM-TXGIENHVNSLHDNVLGEFFQKRQDVFNLGFIG*STQSNAVFGGSRGDNV 85
L +CL GM T + H +SLHD+ F+K + + I +S F G G +
Sbjct: 44 LRKCLEVGMETSNFQYHRDSLHDSESSSVFKKLEAKHSKQTISKIPKSFECFVGRPGMIL 103
Query: 84 LW--HQRHWQKTF 52
W + +KTF
Sbjct: 104 FWDAQKSKHRKTF 116
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 174 GRIRQEHCRARSSHGFQCPXSSQRRGIHSDGQRGQRFPLCPAEASPVHDLREETTVHRGV 353
G ++ +C+ +CP RG + G++G R CP A P + E V
Sbjct: 240 GPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECPNPAKPREGVEGEGPKATYV 297
Query: 354 PV 359
PV
Sbjct: 298 PV 299
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 174 GRIRQEHCRARSSHGFQCPXSSQRRGIHSDGQRGQRFPLCPAEASPVHDLREETTVHRGV 353
G ++ +C+ +CP RG + G++G R CP A P + E V
Sbjct: 240 GPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECPNPAKPREGVEGEGPKATYV 297
Query: 354 PV 359
PV
Sbjct: 298 PV 299
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 174 GRIRQEHCRARSSHGFQCPXSSQRRGIHSDGQRGQRFPLCPAEASPVHDLREETTVHRGV 353
G ++ +C+ +CP RG + G++G R CP A P + E V
Sbjct: 240 GPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECPNPAKPREGVEGEGPKATYV 297
Query: 354 PV 359
PV
Sbjct: 298 PV 299
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 ESYKPNQHPGPRPPAPAEGLLP 66
ES +P Q P P PPA A+ LP
Sbjct: 899 ESIRPEQAPPPPPPAHAKPTLP 920
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 1 ESYKPNQHPGPRPPAPAEGLLP 66
ES +P Q P P PPA A+ LP
Sbjct: 899 ESIRPEQAPPPPPPAHAKPTLP 920
>U97401-1|AAB52466.2| 336|Caenorhabditis elegans Hypothetical
protein F21A9.2 protein.
Length = 336
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 499 PNIRAAGLAASVPLLNSNKSKDRGTTPSGTSPGSRRPLAP 380
PN + L+ +P++N ++ R +TP S P P
Sbjct: 160 PNFSTSKLSVQIPIINLDEKNVRTSTPLDLSSSPHAPSVP 199
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +3
Query: 174 GRIRQEHCRARSSHGFQCPXSSQRRGIHSDGQRGQRFPLCPAEASPVHDLREETTVHRGV 353
G ++ +C+ +CP RG + G++G R CP A P E V
Sbjct: 451 GPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECPNPAKPREGAEGEGPKATYV 508
Query: 354 PV 359
PV
Sbjct: 509 PV 510
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +3
Query: 174 GRIRQEHCRARSSHGFQCPXSSQRRGIHSDGQRGQRFPLCPAEASPVHDLREETTVHRGV 353
G ++ +C+ +CP RG + G++G R CP A P E V
Sbjct: 451 GPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECPNPAKPREGAEGEGPKATYV 508
Query: 354 PV 359
PV
Sbjct: 509 PV 510
>AL034393-6|CAA22321.1| 507|Caenorhabditis elegans Hypothetical
protein Y18D10A.8 protein.
Length = 507
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/71 (23%), Positives = 27/71 (38%)
Frame = +1
Query: 7 YKPNQHPGPRPPAPAEGLLPVALVPQHVITSGTAKDCVRLRGLPYEAQVEHILTFLEEFA 186
Y N+ G PAP G+ P A P +TS P + ++ + F + A
Sbjct: 122 YYVNRPEGQHDPAPTVGIPPSATSPPTQVTSSVTSPVPSSPQPPMQFVPQNPMMFQDPMA 181
Query: 187 KNIVVQGVHMV 219
N G+ +
Sbjct: 182 ANHNAGGIFFI 192
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.5 bits (58), Expect = 8.6
Identities = 23/77 (29%), Positives = 31/77 (40%)
Frame = -1
Query: 523 GRLGVSGSPNIRAAGLAASVPLLNSNKSKDRGTTPSGTSPGSRRPLAPCSCRRLNTGTPR 344
G VSGS +G S P + S S G+T +G S S A S + T
Sbjct: 990 GESTVSGSTESTVSGSTESTPTVPSTVSGSTGSTVTGESTVS-GSTASTSSGSTGSSTEA 1048
Query: 343 CTVVSSRRSCTGDASAG 293
+ VS + T +S G
Sbjct: 1049 GSTVSGSSASTVTSSTG 1065
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +3
Query: 174 GRIRQEHCRARSSHGFQCPXSSQRRGIHSDGQRGQRFPLCPAEASPVHDLREETTVHRGV 353
G ++ +C+ +CP RG + G++G R CP A P E V
Sbjct: 451 GPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECPNPAKPREGAEGEGPKATYV 508
Query: 354 PV 359
PV
Sbjct: 509 PV 510
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,466
Number of Sequences: 27780
Number of extensions: 383670
Number of successful extensions: 1416
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1408
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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