Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0782
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    33   0.031
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    27   2.7  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   6.2  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   8.2  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    25   8.2  
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    25   8.2  

>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 33.1 bits (72), Expect = 0.031
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 222 STGRPPVRFQSSLYIPHGVTTLFFFFLYFEISSYPQF 332
           S+GRP +R QS+ Y  HG+  L    L +   ++P F
Sbjct: 189 SSGRPSIRLQSTQYFEHGLFILDLIHLPYGCGTWPAF 225


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 481 IHISYDKLLVGGWKLKDYKCSNDSLDRPSTANCES 377
           +H S  K+L G W    Y    ++ D  ST NCES
Sbjct: 240 LHGSEKKVLSGSWDKMVYYWDLNTGDAISTYNCES 274


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 150 FLFFT*GDLILFVCRHKSYEGTRQS 224
           +LF+T   L L +C  +SYE T  S
Sbjct: 143 YLFYTHTFLALLLCGRRSYENTMSS 167


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 34  VVCEVF*YKLFISVKLSLVRKHSSST 111
           V C+ F   + +S K SLV+ HS+ST
Sbjct: 523 VYCDTF--DVLVSYKRSLVKNHSNST 546


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 426 SARTTHWIDRRLLTARATDMPY 361
           +AR THW++RR+   ++T + Y
Sbjct: 278 NARLTHWVERRI--GKSTSLVY 297


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 505 LLLLNGGYIHISYDKLLVGGWKLKDYKCSNDSLDRP 398
           +L L+GG + + YDK+++ G     YK  + +++RP
Sbjct: 121 ILHLHGGMMALPYDKVILVGLS-NLYKLFSTTMNRP 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,390
Number of Sequences: 5004
Number of extensions: 49419
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)