Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0782
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0235 + 23819060-23819114,23819486-23819542,23819707-238198...    28   4.8  
02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615...    28   6.3  
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467...    27   8.4  

>04_04_0235 +
           23819060-23819114,23819486-23819542,23819707-23819808,
           23820162-23820238,23820347-23820470,23820730-23820794,
           23821827-23821896,23822395-23822470,23822597-23822687,
           23822767-23822889
          Length = 279

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 523 QSDRDTLLLLNGGYIH-ISYDKLLVGGWKLKDYKCSNDSL 407
           +SD +T  L   G +H  ++ K   G W L DY C + SL
Sbjct: 36  RSDEETGYLFIDGQLHEFNWFKERFGSWFLGDYVCEDGSL 75


>02_03_0212 -
           16460665-16460766,16460971-16461298,16461379-16461502,
           16461576-16461825,16462185-16462265,16463030-16463114,
           16463200-16463321,16463865-16464672,16464775-16465027,
           16465998-16466796
          Length = 983

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 514 RDTLLLLNGGYIHISYDKLLVGGWKLKDYKCSNDSL 407
           R TL+     Y    Y K+LVG W +   K S +SL
Sbjct: 549 RSTLIEAEPLYKQFEYMKVLVGSWNVGQEKASYESL 584


>01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,
            4675953-4676072,4676185-4676313,4676394-4676442,
            4676899-4676970,4677574-4677707,4677798-4677915,
            4678332-4678541,4678630-4678942,4679539-4679632,
            4679854-4679962,4680243-4680514,4680597-4680724,
            4680832-4681066,4681570-4681758,4681845-4682128,
            4682218-4682398,4682486-4682728,4682904-4682986,
            4683119-4683227,4687996-4688091,4688675-4688764,
            4688881-4689129,4689233-4689412,4690179-4690250,
            4691385-4691474,4691605-4691705,4691794-4691959
          Length = 1757

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 269  WNVQRGLKPYRRTPSRLACTL 207
            WN Q G+K   R PS L C++
Sbjct: 1474 WNTQTGMKSSLREPSGLVCSM 1494


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,990
Number of Sequences: 37544
Number of extensions: 311407
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)