Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0780
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    29   0.77 
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    28   1.4  
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   5.5  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   5.5  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   9.5  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   9.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   9.5  

>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +1

Query: 400 DNMKQYILGMDIGTTSVKVCIYDYHTKEVIAN 495
           + +K  ++G+D+GTT+  + I +  T +VIAN
Sbjct: 46  EKVKGPVIGIDLGTTTSCLAIMEGQTPKVIAN 77


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/96 (21%), Positives = 40/96 (41%)
 Frame = +1

Query: 364 LELFFIYSFTMADNMKQYILGMDIGTTSVKVCIYDYHTKEVIANQNKDTAANIPSDQGIE 543
           L L F+ +  MAD +  Y+L  +   TS+         +E      +    +I     + 
Sbjct: 432 LTLIFVETKRMADTLTDYLLNSNFPATSIH-GDRTQRERERALELFRSGRTSIMVATAVA 490

Query: 544 GNKQDVPKIVSAVHFCVSRLPRDLLKHVTKIGICGQ 651
               D+P +   +++    LP D+  +V +IG  G+
Sbjct: 491 SRGLDIPNVTHVINY---DLPTDIDDYVHRIGRTGR 523


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 319 DTKLCTHISDFYTIKLELFFIYSFTMADNMKQYILGMDIGTTSVKVCIY 465
           + +LC  + +  T    +  + S T     K+ I+G+DIGT +   CIY
Sbjct: 44  ENRLCPMVPNRATYIRYIHDLLSSTSGQKDKKRIIGLDIGTGA--SCIY 90


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 541 EGN--KQDVPKIVSAVHFCVSRL 603
           EGN  KQD+PK+++ V   +SRL
Sbjct: 783 EGNPDKQDIPKVINIVRGFLSRL 805


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 406 MKQYILGMDIGTTSVKVCIYDYH 474
           ++QY+L +D G+T  +V +Y ++
Sbjct: 131 VRQYVLMIDAGSTGSRVHVYQFN 153


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 331 CTHISDFYTIKLELFFIYS 387
           C H++D++T KLE    Y+
Sbjct: 182 CAHLTDYFTFKLECTHKYN 200


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 164 LFVVLISLSGICLSTLSLITNLQPINKSCE 75
           LFV   S+   CL+  SL +N+ P N + E
Sbjct: 365 LFVTAFSVCCECLAWTSLFSNISPENLAIE 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,751
Number of Sequences: 5004
Number of extensions: 54573
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)