Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0780
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1370 - 32990002-32990244,32990950-32991943,32992019-329922...    33   0.15 
02_05_1095 - 34076910-34077431                                         28   7.5  
04_04_1183 - 31537196-31537290,31537665-31537986,31538176-315382...    27   9.9  

>04_04_1370 -
           32990002-32990244,32990950-32991943,32992019-32992240,
           32993413-32993543
          Length = 529

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +1

Query: 415 YILGMDIGTTSVKVCIYDYHTKEVIANQNKDTAANIPSDQGIEGNKQDVPKIVSAVHFCV 594
           Y+  +D GTTS +  +YD H K V ++Q  +   + P    +E    D  +I+ +V  C+
Sbjct: 6   YVASIDQGTTSTRFIVYDRHAKPVASHQ-LEFKQHYPEAGWVE---HDPMEIMESVKICM 61

Query: 595 SR 600
           ++
Sbjct: 62  AK 63


>02_05_1095 - 34076910-34077431
          Length = 173

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 233 TNHPQSTHCSLHGAQQR 283
           TNHP S  CSLH  Q+R
Sbjct: 55  TNHPGSFRCSLHKEQKR 71


>04_04_1183 - 31537196-31537290,31537665-31537986,31538176-31538277,
            31538826-31539071,31539385-31539506,31539588-31540344,
            31540447-31540770,31540872-31541052,31541208-31541602,
            31541877-31541942,31542225-31542377,31542593-31542691,
            31542776-31542982,31543432-31543572,31543852-31544019,
            31544302-31544395,31544479-31544585,31545140-31545274,
            31545549-31545656,31545975-31546049,31546197-31546262,
            31546500-31546556,31546678-31546702,31546809-31546889,
            31546966-31547080,31547211-31547370,31547444-31547483,
            31547599-31547780,31547905-31548234
          Length = 1650

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 280  LLCTMKRAVGGLWVVSLVWSQYA 212
            +L   K A+GG+WVVS+++  YA
Sbjct: 932  VLSRYKNALGGIWVVSVLFFCYA 954


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,737
Number of Sequences: 37544
Number of extensions: 329807
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)