Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0780
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical pr...    36   0.033
Z83241-2|CAB05816.2|  435|Caenorhabditis elegans Hypothetical pr...    33   0.13 
X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.        31   0.71 
U88315-3|AAB42371.1|  657|Caenorhabditis elegans Heat shock prot...    31   0.71 
AL110490-10|CAB54446.1|  430|Caenorhabditis elegans Hypothetical...    31   0.94 
U88167-6|AAB42223.1|  461|Caenorhabditis elegans Acetylcholine r...    29   2.2  
Z82260-10|CAB05138.1|  361|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U88181-3|AAB42302.2|  523|Caenorhabditis elegans Hypothetical
           protein C55B6.1a protein.
          Length = 523

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +1

Query: 394 MADNMKQYILGMDIGTTSVKVCIYDYHTKEVIANQNK 504
           MAD+ + ++L +DIGTT+++  +YD   KE  + Q K
Sbjct: 1   MADDSENFVLTVDIGTTTIRSVVYDSKCKERGSYQEK 37


>Z83241-2|CAB05816.2|  435|Caenorhabditis elegans Hypothetical
           protein T25C8.1 protein.
          Length = 435

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 24/82 (29%), Positives = 39/82 (47%)
 Frame = +1

Query: 409 KQYILGMDIGTTSVKVCIYDYHTKEVIANQNKDTAANIPSDQGIEGNKQDVPKIVSAVHF 588
           +Q  +G+DIGTTS K+C    + + VI    K    +     G++  K  +  ++  +  
Sbjct: 3   EQVHVGIDIGTTSAKICA--RNGENVILEFKKIYEGDNSDAAGLQNPKIIIQTVLDLLER 60

Query: 589 CVSRLPRDLLKHVTKIGICGQM 654
             S L    LK ++ I  CGQM
Sbjct: 61  TKSNLESRNLK-ISNIWTCGQM 81


>X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.
          Length = 487

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +1

Query: 391 TMADNMKQYILGMDIGTTSVKVCIYDYHTKEVIAN 495
           +++D  K +++G+D+GTT+  V I +  T +VI N
Sbjct: 24  SLSDKPKGHVIGIDLGTTNSCVSIMEGKTPKVIEN 58


>U88315-3|AAB42371.1|  657|Caenorhabditis elegans Heat shock protein
           protein 6 protein.
          Length = 657

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +1

Query: 391 TMADNMKQYILGMDIGTTSVKVCIYDYHTKEVIAN 495
           +++D  K +++G+D+GTT+  V I +  T +VI N
Sbjct: 24  SLSDKPKGHVIGIDLGTTNSCVSIMEGKTPKVIEN 58


>AL110490-10|CAB54446.1|  430|Caenorhabditis elegans Hypothetical
           protein Y48B6A.10 protein.
          Length = 430

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 406 MKQYILGMDIGTTSVKVCIYDYHTKEVIANQNKDTAANIPSDQG 537
           MKQ+++ M IG TS+K+   D H + V+     D       D G
Sbjct: 307 MKQFVMTMLIGETSLKLYHNDAHCRNVLLTDTDDEYLEYKPDGG 350


>U88167-6|AAB42223.1|  461|Caenorhabditis elegans Acetylcholine
           receptor protein 11 protein.
          Length = 461

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -1

Query: 534 LVTRYVSCCVLVLISNHFFSVIIVNAYFY*SGTNVHSQNVL 412
           L+  + SCC+LV+ ++  F+++++N +F     + H  N L
Sbjct: 301 LIGVFFSCCMLVVSASVVFTIVVLNLHF--RSADSHEMNPL 339


>Z82260-10|CAB05138.1|  361|Caenorhabditis elegans Hypothetical
           protein C32H11.12 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 313 PIDTKLCTHISDFYTIKLELFFIYSFTMADNMKQYIL 423
           P+  K    ++ F   +  +  +  FTMADN K Y+L
Sbjct: 152 PVAAKPSEKLTTFVGDRNSMMSLMGFTMADNSKNYLL 188


>Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical
           protein C40C9.2 protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = -1

Query: 534 LVTRYVSCCVLVLISNHFFSVIIVNAY 454
           L+  + SCC+LV+ ++  F+V+++N +
Sbjct: 304 LIGAFFSCCMLVVSASVVFTVLVLNLH 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,005
Number of Sequences: 27780
Number of extensions: 312290
Number of successful extensions: 796
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)