Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0779
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    27   0.82 
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    26   2.5  

>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 0.82
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 319 GVDKPVNSMFIGTSPELEMALYTLCFVTRADSECNLKLSNNDVSIMTHTFRLPG 158
           G D  V ++  G    +    Y + F    D  C   L+N D +  T+   LPG
Sbjct: 146 GPDPSVGAVLCGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQDSTFPTNGKFLPG 199


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 385 GYLKYRPFGERGAVIKFHFTXQGVDKP-VNSMFIGTS 278
           GY+KY P G   A++ +++       P ++++F G +
Sbjct: 121 GYVKYEPLGVIAALVSWNYPLHNALGPIISALFAGNA 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,625,145
Number of Sequences: 5004
Number of extensions: 30680
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)