Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0779
         (403 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    45   2e-05
06_01_0031 - 305457-305663,306248-306523,306824-307609                 28   2.4  
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600...    28   3.2  
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674...    26   9.7  
07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976           26   9.7  

>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = -1

Query: 397 LNYLGYLKYRPFGE----RGAVIKFHFTXQGVDKPVNSMFIGTSPELEMALYTLCF 242
           ++Y GY+  R  GE       ++   F   GV K V+S  IG SPE E+ALYTLCF
Sbjct: 387 VDYQGYIFPRRRGESPDSETQLLTIQFEWHGVLKSVSSTLIGVSPEFEVALYTLCF 442


>06_01_0031 - 305457-305663,306248-306523,306824-307609
          Length = 422

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 192 TSLLDSFRLHSLSARVTKHKVYNAISNSGDVPMNIELTGL--STPCXVKWNLITAPRS 359
           +SLLD F LH+L+ RV++ ++  A       P + + T +  ST   VKW     PR+
Sbjct: 64  SSLLDPFLLHTLTDRVSQLELALAARAPHPRPTSRKCTYVTESTGRKVKWTTEDKPRA 121


>10_08_0682 +
           19858131-19858230,19858313-19858954,19859041-19860016,
           19860105-19860147
          Length = 586

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 322 QGV-DKPVNSMFIGTSPELEMALYTLCFVTRADS 224
           QGV D P+NS+FI +   +E++L  +  +TR+ S
Sbjct: 320 QGVADNPMNSVFIPSPVPVELSLVQVVGITRSGS 353


>11_06_0618 +
           25565780-25566064,25566855-25567046,25567144-25567416,
           25567636-25567738,25568273-25568391,25568615-25568782,
           25568908-25569386,25569742-25569850,25569905-25570070,
           25571405-25571433
          Length = 640

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 333 TSPXKEWTSRLTLCSLVHHLSWKWHCILC 247
           T   ++W    T+C L+H+    +H I C
Sbjct: 605 TGGNQKWLGNFTICHLIHNPITIYHSIRC 633


>07_01_0676 + 5062778-5063089,5063912-5064194,5064883-5065976
          Length = 562

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 162 GKRKV*VMILTSLLDSFRLHSLSARVTKHKVYNAISNSGDVPMNI 296
           G+  V V + +  +D+ R   L  RV   +V N   NSGD P+++
Sbjct: 288 GRNAVHVAVSSGKVDALRC--LLGRVRPAEVVNRGDNSGDTPLHL 330


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,089,068
Number of Sequences: 37544
Number of extensions: 186922
Number of successful extensions: 351
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)