Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0779
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical pr...    47   4e-06
U41531-5|AAA83159.3|  432|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    26   8.8  
AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine re...    26   8.8  

>Z75544-4|CAA99880.1|  307|Caenorhabditis elegans Hypothetical
           protein K02A11.3 protein.
          Length = 307

 Score = 47.2 bits (107), Expect = 4e-06
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = -1

Query: 331 FTXQGVDKPVNSMFIGTSPELEMALYTLCFVTRADSE-CNLKLSNNDVSI 185
           FT  G+ K   S+ IGTSPE +MALYT+CF++R   E C+++     + I
Sbjct: 224 FTWDGLLKRAGSILIGTSPEFDMALYTMCFLSRRGRETCDVEFDGCPLQI 273


>U41531-5|AAA83159.3|  432|Caenorhabditis elegans Hypothetical
           protein T07D1.2 protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 281 CTNEHRVNRLVHSLXGEVEFNHCSTLPKWS 370
           C  E +VN  + +  GE+ FN C  L  WS
Sbjct: 23  CRQEEKVNA-IRACAGEIRFNACEYLINWS 51


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 30/107 (28%), Positives = 47/107 (43%)
 Frame = +2

Query: 2   TRYRLIYNNL*IYTFIII*LHGLYLVA*LSNNFTSGSDKLGSVDSHYRLDFYSR*TESVS 181
           + Y+LI  N   +T I+    G  LV  + N +    +  G   S   L+FYS   E++S
Sbjct: 35  SNYQLIEFNSTTHTLIVDSESGQDLVTGIFNLYDQNRNHAGY--SCLGLNFYSTLLEAIS 92

Query: 182 HDTDIVVGQFQVTLAVSTSHEAQSIQCHFQLR*CTNEHRVNRLVHSL 322
           HD     G   V L    + +  S +   Q R   N+ ++N +  SL
Sbjct: 93  HDNVQWGGMIYVFLYGQPAQDLDSYEKILQ-RIEVNKIQINVVQSSL 138


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 240  TKHKVYNAISNSGDVPMNIELTGLSTPCXVKWNLIT 347
            T H  +N ++N   VP+N    G++     +W  ++
Sbjct: 2174 TSHAAHNKLNNRVAVPLNNPFAGINDHLATQWESVS 2209


>AC006680-8|AAK72298.1|  355|Caenorhabditis elegans Serpentine
           receptor, class t protein6 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -1

Query: 310 KPVNSMFIGTSPELEMALYTLCFVTRADSECNLKLSNNDVSIMTHTFRLPGVKI*SV 140
           +P+   +  TS  + + LYTLCF+  A  + NL++  N + ++     +  + I SV
Sbjct: 35  RPILGAYFFTSGVIFIFLYTLCFL--AILKLNLRVPVNQLMLLLSILDILSLSINSV 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,902,841
Number of Sequences: 27780
Number of extensions: 171256
Number of successful extensions: 294
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)