Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0779
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 228 SARVTKHKVYNAISNSGDVPMNIELT 305
           S +V+KH+  +  S +G  P N+  T
Sbjct: 711 SFKVSKHEEVSRTSTAGQFPTNVATT 736


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 161 GSKNLIGSGYPQILTCHCR 105
           G K +  SG P+   CH R
Sbjct: 466 GDKYMAVSGLPEPCRCHAR 484


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 161 GSKNLIGSGYPQILTCHCR 105
           G K +  SG P+   CH R
Sbjct: 466 GDKYMAVSGLPEPCRCHAR 484


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 217 NLKLSNNDVSIMTHTFRLPGVK 152
           +LKLSN D+S+   T  +  ++
Sbjct: 725 DLKLSNPDISVEDGTLSINNIQ 746



 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +1

Query: 193 HRCWTVSGYTRCQHESRSTKYTMPF 267
           ++C   S     +H +R   Y +PF
Sbjct: 469 YKCIAASKVGSAEHSARLNVYGLPF 493


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 291 SLVHHLSWKWHCI 253
           ++VH   WKW+ I
Sbjct: 32  AIVHLFEWKWNDI 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,873
Number of Sequences: 438
Number of extensions: 2565
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)