Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0773
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 32 0.33
05_04_0229 + 19235663-19236166 31 0.77
03_06_0553 - 34682581-34683183,34683687-34683842,34684154-346842... 29 1.8
05_03_0125 + 8738770-8739237,8739266-8739742 29 2.4
08_02_0831 + 21619891-21620724 28 4.1
07_03_0634 + 20125242-20125688 28 4.1
06_03_0830 + 25159758-25162460 28 4.1
09_04_0507 + 18194320-18195081 27 7.2
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 27 7.2
10_02_0144 + 5815403-5815520,5815551-5816314 27 9.5
05_05_0091 + 22319411-22320901 27 9.5
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 31.9 bits (69), Expect = 0.33
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 375 GGGPRX--RSEERLATATAKLSEASQAADESERARKVLENRSLADEERMDA 521
GGG R EE ++ + SEAS ++DE E R+ E S +DEE A
Sbjct: 158 GGGDREDKSDEEESESSKEESSEASSSSDEEEDKRESSEASSSSDEEEQMA 208
>05_04_0229 + 19235663-19236166
Length = 167
Score = 30.7 bits (66), Expect = 0.77
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +3
Query: 366 PTAGGGPRXRSEERLATATAKLSEASQAADESERARKVLENRSLADEERMDAL 524
P+ GGG R R + R A A+ ADE+E A V+E R L D R A+
Sbjct: 12 PSRGGGARRRPDLRGAAVVLVEVAAAAVADEAEVA-AVVEARRLPDLRRAAAV 63
>03_06_0553 -
34682581-34683183,34683687-34683842,34684154-34684272,
34684691-34684793,34685027-34685299,34685411-34685602,
34686691-34687029
Length = 594
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 501 PPTTCSRAPYVRARIHRRPGWPRTAWRW 418
PP+TC A V AR RR W T RW
Sbjct: 71 PPSTCCEAAAVAARTARRT-WDLTVGRW 97
>05_03_0125 + 8738770-8739237,8739266-8739742
Length = 314
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = +3
Query: 399 EERLATATAKLSEASQAADESERARK--VLENRSLA--DEERMD 518
EE++A A KL E Q A+E+++ RK V+E+ + +E+MD
Sbjct: 268 EEKIAAAKRKLREGYQDAEEAKKRRKIHVIEDPKMLKHKQEKMD 311
>08_02_0831 + 21619891-21620724
Length = 277
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 336 VRSGCPEPTYP---TAGGGPRXRSEERLATATAKLSEASQAADE 458
V+SGC +P T GGG R RL++A E S ADE
Sbjct: 168 VQSGCCKPPTSCNFTYGGGTRWGKTARLSSADPDCDEWSNDADE 211
>07_03_0634 + 20125242-20125688
Length = 148
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 258 DQTXGVSHAG*RKARREGEGSXRT-LXVRSGCPEPTYPTAGGGPR 389
++ G +H R+ R+ +GS L C E TYP A G P+
Sbjct: 104 ERLVGTAHLPRRRPERQPQGSGAVPLPTPDACAECTYPRAVGLPK 148
>06_03_0830 + 25159758-25162460
Length = 900
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 396 SEERLATATAKLSEASQAADESERARKVLENRSLADEERMDALE 527
+E RL ++S+AAD+ +A K + LA+ + DALE
Sbjct: 364 NELRLKRCMTSFGDSSKAADKKSKAEKGDTSTPLAEYDDTDALE 407
>09_04_0507 + 18194320-18195081
Length = 253
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/58 (31%), Positives = 23/58 (39%)
Frame = +3
Query: 297 ARREGEGSXRTLXVRSGCPEPTYPTAGGGPRXRSEERLATATAKLSEASQAADESERA 470
A E EG +G P+ A GP S E + A A E S +E+E A
Sbjct: 131 ASEEAEGEEEA---PAGAPDAEAEEAASGPSEASSEEPSAAAAAAPEESGGGEEAEPA 185
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +3
Query: 318 SXRTLXVRSGCPEPTYPTAGGGPRXRSEERLATATAKLSEASQAADESERARKVLENRS 494
S L RS P P P AGGG R+ R + A+ S A E +V + RS
Sbjct: 126 SAAALPRRSLPPHPPIPPAGGGADLRNTARRTQSGAEGSGLPAPAAEQTAKPRVSDLRS 184
>10_02_0144 + 5815403-5815520,5815551-5816314
Length = 293
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 260 PDTXSLSCRLTESSKRRRRLXQNAXSPKW 346
P T S CR ++KRR+ + + SP W
Sbjct: 119 PATSSTRCRFAVANKRRQIRARRSSSPTW 147
>05_05_0091 + 22319411-22320901
Length = 496
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 402 ERLATATAKLSEASQAADESERARKVLENR 491
ERL ATAKL +A D+ E A + L R
Sbjct: 140 ERLVAATAKLCAEMEALDKLEAAEQKLARR 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,043,654
Number of Sequences: 37544
Number of extensions: 164717
Number of successful extensions: 757
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -