Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0771
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF068716-4|ABQ13068.1|  128|Caenorhabditis elegans Hypothetical ...    27   9.9  

>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 517 SITHRGKNIEFRQILKVHRQSN 582
           S+ HRG+N +F+Q+L+ H   N
Sbjct: 251 SLKHRGQNQKFKQMLEKHASRN 272


>AF068716-4|ABQ13068.1|  128|Caenorhabditis elegans Hypothetical
           protein F26D11.12 protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/70 (22%), Positives = 32/70 (45%)
 Frame = -3

Query: 279 KRQYCFFPESQLKFTIWKKYHNKKLLQLFQCTKHN*SSIKNIELMMLIPNKSHL*LXREM 100
           K+  C    S+  +      + K L     C K +  ++ N+E + LI NK+ +   +E+
Sbjct: 26  KKVTCLLENSEKDYLYTDDTNYKHLFD--DCKKEHTIALANLESLKLILNKNSIGQRKEI 83

Query: 99  SRIKRNFGSY 70
             +K+ F  +
Sbjct: 84  DELKQLFNGF 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,248,273
Number of Sequences: 27780
Number of extensions: 238848
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)