Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0769
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   1.4  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   3.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.6  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 356 VNILSEISNFNYIIEFIFLYCQNIHDLT 439
           VN  S+IS F  +I+FI   C   HD+T
Sbjct: 48  VNPSSDISEFCSLIDFISQTCNYYHDVT 75


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 378 DISDKIFTLLLSSSWVSMVIKIVSCVVKYGDDIL*NYY*SD*YTLHDIFHYGKQ 217
           D  D I  +  ++ W+S +IK +    KYG +    Y+  D YTL+   H+G +
Sbjct: 69  DKLDYIQGMGFTAIWISPIIKNIEGRTKYG-EAYHGYWPQDLYTLNP--HFGTE 119


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 59  RYIKSRTLENLLNEHYNNFLPCLQYYC 139
           R+I  +TL ++  +HY    P ++ +C
Sbjct: 327 RFIFQKTLHDIQQKHYARSWPAIKAFC 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,603
Number of Sequences: 5004
Number of extensions: 34614
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)