Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0744
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 90 3e-19
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 76 4e-15
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 60 2e-10
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 53 4e-08
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 45 9e-06
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 36 0.005
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 31 0.12
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 29 0.82
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 2.5
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 3.3
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 4.4
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 26 4.4
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 26 5.8
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 7.6
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 89.8 bits (213), Expect = 3e-19
Identities = 54/140 (38%), Positives = 72/140 (51%), Gaps = 8/140 (5%)
Frame = +1
Query: 280 FYRNRTKIDRLEGGNTTVLENKVR----QYYGSDVAEEDEDNTVAGHMDLITFITKSECE 447
F+ N +ID L G N L+ KV + G+ V G L I + E
Sbjct: 80 FFENGKQIDMLTGANPQALKEKVALISSKATGTGALASSSSAPVKGFASLQGCIENPQLE 139
Query: 448 CLNEADDHPLAQAL-TNDRGYLASYCDEQLIINISFNQLVKLHSIKI---KGPADKGPKS 615
CLN+ DDH L A +N +L S DEQL+I I F ++VK+HSI I KG PK+
Sbjct: 140 CLNQQDDHDLKSAFNSNPSSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKGETSSAPKT 199
Query: 616 IKLFINQPRTLDFDQAAGYS 675
IKL+INQP L F+ A ++
Sbjct: 200 IKLYINQPNNLSFEDAESFT 219
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +2
Query: 59 IQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF--PRAVFLKVDVDRC 232
I++ H+ + + +G + VD A WC PC+ I+P F QL +K+ P+ VF KV+VD
Sbjct: 6 IRSYQHWISTIPKSG--YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQ 63
Query: 233 ADTASAQGVSAMPTFISTETG 295
AS GV AMPTF+ E G
Sbjct: 64 RQIASGLGVKAMPTFVFFENG 84
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 76.2 bits (179), Expect = 4e-15
Identities = 35/65 (53%), Positives = 44/65 (67%)
Frame = +2
Query: 107 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVDRCADTASAQGVSAMPTFIST 286
KLVVVDF ATWC PC+ IAP FEQ + A F+KVDVD+ ++ A+ GV AMP+F
Sbjct: 19 KLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLY 78
Query: 287 ETGPK 301
+ G K
Sbjct: 79 KNGEK 83
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/63 (41%), Positives = 38/63 (60%)
Frame = +2
Query: 107 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVDRCADTASAQGVSAMPTFIST 286
K+ VVDF A WC PC+ + PF E+L + +A F+ V+ D+ +D A GV A+PT +
Sbjct: 36 KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLF 95
Query: 287 ETG 295
G
Sbjct: 96 RKG 98
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 52.8 bits (121), Expect = 4e-08
Identities = 21/68 (30%), Positives = 41/68 (60%)
Frame = +2
Query: 77 FQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVDRCADTASAQG 256
FQ + N ++++++F A W PC+++ F+Q AVFLK++ ++ +D A +
Sbjct: 11 FQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDIAESFD 70
Query: 257 VSAMPTFI 280
V+A+P F+
Sbjct: 71 VNAVPLFV 78
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +2
Query: 98 AGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFP---RAVFLKVDVDRCADTASAQGVSAM 268
A K +++F ATWC C+ +AP +E+L A F + K+D D +D A ++
Sbjct: 37 ASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGF 96
Query: 269 PTFI 280
PT I
Sbjct: 97 PTLI 100
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +2
Query: 107 KLVVVDFTATWCPPCQRIAPFFEQLPAKF---PRAVFLKVDVDRCADTASAQGVSAMPT 274
K V+V+F A WC C+R+AP +E L F P +K++ D AD V++ PT
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPT 217
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +2
Query: 104 TKLVVVDFTATWCPPCQRIAPFFEQLPAKF---PRAVFLKVDVDRCADTASAQGVSAMPT 274
TK V+V+F A WC C+ +AP +E+L ++ V K+D + + +S PT
Sbjct: 373 TKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKID---ATENDISVSISGFPT 429
Query: 275 FISTETGPK 301
+ + K
Sbjct: 430 IMFFKANDK 438
Score = 31.9 bits (69), Expect = 0.088
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 107 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPR--AVFLKVDVDRCADTASAQGVSAMPT 274
K+++V F A WC C+ +AP +E + + ++VD D S + PT
Sbjct: 40 KVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPT 97
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 31.5 bits (68), Expect = 0.12
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +2
Query: 44 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPR---AVFLK 214
G T+ N +F+ + G LVV F A WC C+++ P +++L + +
Sbjct: 30 GSNTIELNSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVD 87
Query: 215 VDVDRCADTASAQGVSAMPT 274
D D+ S V PT
Sbjct: 88 CDADQNRAVCSQYQVQGFPT 107
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.82
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 160 NPLARWTPSCCKVHND*LGSSVSHFSLE 77
NPL RWTP K H G+S S + ++
Sbjct: 442 NPLKRWTPDQAKNHPFITGASFSQYCID 469
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 397 VAGHMDLITFITKSECECLNEADDHP 474
V H+D I FITKS C + E D P
Sbjct: 1285 VVNHIDRIMFITKSLCGEIFEIDKWP 1310
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 135 LGVHRAKGLPLFSSSYQQSFREQYF 209
LGV+R KGL FSS+++ EQ+F
Sbjct: 471 LGVNRYKGLFYFSSAFRPCPIEQHF 495
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 322 NTTVLENKVRQYYGSDVAEEDEDNTVAGHM 411
NT+ + + + +YGSD+ E ++D A M
Sbjct: 366 NTSFVSSNINNWYGSDLEELEQDVKTAKSM 395
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 77 FQTEMANAGTKL-VVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKV 217
+ E+ +A ++ VVV P C+ +A E+L +P+ F+K+
Sbjct: 97 YTAEVTDASKEVFVVVHMFQDSLPACKLLAAILERLAPMYPQIKFVKI 144
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 167 FFEQLPAKFPRAVFLKVDVDRCADTASAQGVSAMPTFISTE 289
FFE+L +FP L +DV C S G++A P+ +S E
Sbjct: 335 FFERLSKQFPHHSLLLMDV--CHVDKSLPGINA-PSVLSME 372
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 176 QLPAKFPRAVFLKVDVDRCADTASAQ 253
Q PAKFP +V L+ +D +T Q
Sbjct: 386 QTPAKFPTSVLLRQPIDTYLETMFPQ 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,949
Number of Sequences: 5004
Number of extensions: 45598
Number of successful extensions: 136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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