Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0742
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    28   0.71 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    28   0.93 
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   0.93 
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.2  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   6.6  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   6.6  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   8.7  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 314 P*PTSSRTGPPQTRRGRAAHQPSSTPSSWRV 406
           P PT+     P+  RG+A ++PS    +W++
Sbjct: 337 PVPTNVVKANPRVNRGKAGYEPSENIINWKI 367


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 382 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGE 492
           E   +L   V N I  ++KTC +S ND  ++  DY+S +
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQ 787


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 373 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 510
           S L+   K +S+  N IR +I   E++    H    +S  FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 162 NPVLSHG-GLLLDRYGEPPRLREAILRC 242
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 394 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 507
           ++E DV  S++        +  DYH    LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 67  VSPVTIRDEWLTMEQTCYNMMRKQIQEEV 153
           +S  +++  ++  EQ  Y   +KQ QEE+
Sbjct: 39  LSDASVKSSYVDQEQQAYENWKKQEQEEI 67


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 271 KLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVI 435
           +L DY+L R +L  SV   +  +  +  ++      +   LKLE+ + ++ R ++
Sbjct: 584 ELFDYILARRRLEDSVACRLFAQLISGVAYLHSRGVVHRDLKLENILLDTNRNIV 638


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 82  IRDEW---LTMEQTCYNMMRKQIQEEVAASIQYLAMGA 186
           +RD++   LTM Q C N+  KQ    + A  Q L+ G+
Sbjct: 341 LRDQYSLHLTMAQECMNIFEKQQLNLIGAIEQDLSTGS 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,093
Number of Sequences: 5004
Number of extensions: 38308
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)