Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0741
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    27   2.1  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   5.0  
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe...    25   6.5  

>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 227 ILYHFYCKR--IHIFYVTYEGT*TTR*KHSHVYAHTNYQAHKLLLK 96
           I++ F CK   I  + ++YE T T         +H N+Q +  +LK
Sbjct: 138 IIFKFLCKHGVIKTYKISYEQTQTLHAVFDKSLSHNNFQINSKILK 183


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 302 VIFILFRSKLRRATVKFQLQNL*SYCFKKHSTNNLVFWLAR 424
           ++F +F S     T +F   NL  +  +  S NNL++W A+
Sbjct: 279 LLFPMFFSSNWFTTYQFNDFNLAYFNIRTRSLNNLLYWFAQ 319


>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 133 HIRITKHINYC 101
           HIR+ +HINYC
Sbjct: 189 HIRLEEHINYC 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,940,332
Number of Sequences: 5004
Number of extensions: 34307
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)