Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0738
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    30   0.33 
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   9.5  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   9.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   9.5  

>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 418 LEVFRKALKEHYLSI*YYLYV-FILCISLYFICMCIYMFMCVIVYVYSRIC 269
           L  FR+   E +  + +   + F++ I L+     +YM +CV VYV+ R C
Sbjct: 210 LPFFRRRFYEWFFVLHHMCSIGFLITIWLHHRRCVVYMKVCVAVYVFDRGC 260


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/29 (27%), Positives = 21/29 (72%)
 Frame = -2

Query: 415 EVFRKALKEHYLSI*YYLYVFILCISLYF 329
           E++RK L++  +SI +  ++ ++C+++ F
Sbjct: 414 ELYRKDLQKLGISILFVFFIILVCLAVIF 442


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 409 FRKALKEHYLSI*YYLYVFILCISLYF 329
           ++  L ++ L I YY Y  ++C+S +F
Sbjct: 55  YKNILLKYELFIIYYYYYLLICLSPHF 81


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 358 VFILCISLYFICMCIYMFMCVIVYVYSRIC 269
           + I  I L+     +YM  C+I+Y + R C
Sbjct: 224 LIIFLIWLHHPRTIVYMKACIIIYAFDRGC 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,984
Number of Sequences: 5004
Number of extensions: 34918
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)