Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0733
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 88 6e-19
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 32 0.052
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 28 0.85
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 26 2.6
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 3.4
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 25 4.5
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc... 25 6.0
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 25 6.0
SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos... 25 7.9
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 88.2 bits (209), Expect = 6e-19
Identities = 51/136 (37%), Positives = 78/136 (57%), Gaps = 12/136 (8%)
Frame = +2
Query: 23 ASATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYYTSPICSPSRAAL 202
A + +PN + +ADDLGW+DV GS +I TPN++ L G+ L N++T+ CSP+R+ L
Sbjct: 7 AESKKPNFLVIVADDLGWSDVSPFGS-EIHTPNIERLAKEGVRLTNFHTASACSPTRSML 65
Query: 203 MTGK--------YPIHTGMQHGVIYGAEP--RGLPLNEKI--LPQYLKDLGYKTHLVGKW 346
++G T + ++G +P G LN+++ LP+ L++ GY T + GKW
Sbjct: 66 LSGTDNHIAGLGQMAETVRRFSKVWGGKPGYEGY-LNDRVAALPEILQEAGYYTTMSGKW 124
Query: 347 HLGSYKKEYLPLNRGF 394
HLG Y P RGF
Sbjct: 125 HLGLTPDRY-PSKRGF 139
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 31.9 bits (69), Expect = 0.052
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +2
Query: 53 FLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYYTSPICSPSRAALMTGKYPIHTG 232
F D+ + V H ++P+ N S ++ L SPIC+ S + ++ HT
Sbjct: 603 FQGDNRSPSTVIPHTQTEVPSANDTSKQLASLHDMRKSQSPICARSATSAGLPRFEYHTS 662
Query: 233 MQHGVIYGAEPRGLPLNEKILPQYLKDLG----YKTH 331
+ + + + P L + P ++ + G YK H
Sbjct: 663 LSKSLEHSSTPASLQATKTPSPSFVLEPGIPQEYKKH 699
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 0.85
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Frame = +1
Query: 142 RADAP*LLHVSDLLTFKSCPYDWEISHTY-----RYAARCNIRRGAPRFTPQRENTATIF 306
R++ P L+ S+ T CP + +Y R + R R G RF P N TI
Sbjct: 40 RSNTPTLIDPSNKETANVCPISKNLFQSYPKGSYRNSQRLTSRNGLDRFIPMTSNKDTIS 99
Query: 307 KG 312
G
Sbjct: 100 LG 101
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 2.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 242 RAAYLYVWDISQS*GQLLKVSRSETCSSYGASARRHPENP 123
R Y+Y+WD+ + Q+ KVSR ++ S R +P
Sbjct: 281 RRKYMYIWDLESA--QVQKVSRMYGQENFQPSMERFHVDP 318
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 74 WNDVGFHG--SNQIPTPNLDSLGVSGLMLHNYYTSPICSPSRAALMT 208
WN+ G SN + NL++ + L YT+ I SP ++MT
Sbjct: 47 WNNSGRRNGFSNNVELFNLEARSGASAFLLGSYTAAISSPGVYSMMT 93
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 4.5
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 269 GLPLNEKILPQYLKDLGYKTHLVGKWHLGSYKKEYLPL--NRGFDSHVGFWTGRIDMYDH 442
G+P+ +K L Y K + + + + YK Y P+ + +D H G +D+ D+
Sbjct: 112 GIPIPQKALNIYEKQRSLFSESISNYLVLQYKLRYFPVFDLKIYDFHSGTGIIALDILDY 171
>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 6.0
Identities = 22/68 (32%), Positives = 30/68 (44%)
Frame = +2
Query: 224 HTGMQHGVIYGAEPRGLPLNEKILPQYLKDLGYKTHLVGKWHLGSYKKEYLPLNRGFDSH 403
HT G+I G + GLPL +L L ++ K G GSY ++ L F+ H
Sbjct: 124 HTVPGEGIIQGLKEVGLPLGRGLL--LLAEMSSK----GSLATGSYTEKTL---EWFEKH 174
Query: 404 VGFWTGRI 427
F G I
Sbjct: 175 TDFCFGFI 182
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 6.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 205 DWEISHTYRYAARCNIRRG 261
+W+IS T RY ++C G
Sbjct: 334 NWQISGTCRYGSKCQFAHG 352
>SPAC1952.07 |rad1||checkpoint clamp complex protein
Rad1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 7.9
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +1
Query: 196 CPYDWEISHTYRYAARCNI 252
CP+ WE+ YA C +
Sbjct: 121 CPFIWEVEEMAGYATACEL 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,511
Number of Sequences: 5004
Number of extensions: 54075
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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