Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0733
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0139 + 1263356-1264273                                           33   0.16 
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    32   0.21 
05_03_0140 - 8854929-8855201                                           29   1.5  
08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029           29   2.6  
02_05_0795 - 31792231-31794780                                         29   2.6  
11_04_0227 + 15094941-15095445,15095773-15095865,15096209-150963...    27   6.0  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    27   7.9  
09_02_0548 - 10467342-10468810,10470309-10471632                       27   7.9  
03_02_0427 + 8367633-8368205,8369318-8369809,8370602-8370817,837...    27   7.9  

>01_01_0139 + 1263356-1264273
          Length = 305

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 102 LEPWKPTSFQPRSSA-KKKIILGLVADATPNITIS 1
           L PW+P+S +PRSSA  ++   G  +  TP+ T S
Sbjct: 103 LAPWRPSSRRPRSSAPTRRTAAGATSPTTPSTTTS 137


>07_03_1523 +
           27432991-27433199,27433585-27434185,27434468-27434642,
           27434686-27436418,27436871-27437317
          Length = 1054

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 96  PWKPTSFQPRSSAKKKIILGLVADATPNITI 4
           PW+P +  PRS+  +    G+ ADATP + +
Sbjct: 167 PWRPRAAAPRSALARSTFRGVRADATPAVQL 197


>05_03_0140 - 8854929-8855201
          Length = 90

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 52  LFGGRSRLERCRLPRLQSD 108
           + GG+ ++ RCRLPR+Q D
Sbjct: 54  IMGGKGQIGRCRLPRVQCD 72


>08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029
          Length = 927

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/23 (52%), Positives = 19/23 (82%)
 Frame = +2

Query: 59  ADDLGWNDVGFHGSNQIPTPNLD 127
           +++L WN+V F G+N+I TP+LD
Sbjct: 337 SENLFWNEV-FKGANRIRTPDLD 358


>02_05_0795 - 31792231-31794780
          Length = 849

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 410 FWTGRIDMYDHTTMEQGSWGTDF 478
           FW GRID + H T + G  G  F
Sbjct: 564 FWDGRIDTFGHLTEDSGQRGEFF 586


>11_04_0227 +
           15094941-15095445,15095773-15095865,15096209-15096308,
           15096799-15096874,15099906-15100017,15100924-15101012,
           15101137-15101223,15101623-15101678,15102114-15102462
          Length = 488

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 83  VGFHGSNQIPTPNLDSLGVSGLMLHNYYTSPICS 184
           +G H +  I     D+ G  G MLH Y+  P+ S
Sbjct: 397 IGSHTAEVIDNKECDTAGGEGRMLHPYHRLPVGS 430


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 212 KYPIHTGMQHGVIYGAEPRGLPLNEKIL 295
           KY +  G  +G++Y AEPRG  +  KIL
Sbjct: 169 KYHLGKG-SYGIVYKAEPRGKTVAMKIL 195


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 227 YVWDISQS*GQLLKVSRSETCSSYGASARRH 135
           Y W+++ S G LL +++ +  +  G+ ARRH
Sbjct: 610 YSWELADSRGGLLLLTKMKQRTGDGSPARRH 640


>03_02_0427 +
           8367633-8368205,8369318-8369809,8370602-8370817,
           8371914-8372237,8372991-8373233,8374056-8374250
          Length = 680

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 11  ILGVASATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYYTSPICSPS 190
           +L  ASA RP ++    DD   +  G H S  +P+ + DS         +  T P+ SPS
Sbjct: 23  LLPCASAVRPFVLVLSRDDFLKDTAGAHPS--LPSADADSDEWDDFDDESPATDPLLSPS 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,686
Number of Sequences: 37544
Number of extensions: 375714
Number of successful extensions: 872
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)