Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0733
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domai...   132   1e-31
U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domai...   120   6e-28
U53180-8|AAA96290.1|  452|Caenorhabditis elegans Sulfatase domai...    85   2e-17
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    50   1e-06
AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally sym...    29   1.8  
AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally sym...    29   1.8  

>U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform a protein.
          Length = 488

 Score =  132 bits (319), Expect = 1e-31
 Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 2/145 (1%)
 Frame = +2

Query: 17  GVASATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGV--SGLMLHNYYTSPICSPS 190
           G  +  +PN++F +ADDLG++DV +  S  + TPNL  L    +  +L N Y + +C+P+
Sbjct: 24  GQTATQKPNVLFIMADDLGFSDVDWKDST-LHTPNLRHLAFHKNTALLSNSYVNQLCTPT 82

Query: 191 RAALMTGKYPIHTGMQHGVIYGAEPRGLPLNEKILPQYLKDLGYKTHLVGKWHLGSYKKE 370
           R+A MTG YP   G Q+GV    EP G+P     L + ++ L Y T+LVGKWHLG  KKE
Sbjct: 83  RSAFMTGYYPFRVGTQNGVFLHMEPAGVPTMFPFLSENMRQLDYSTYLVGKWHLGYCKKE 142

Query: 371 YLPLNRGFDSHVGFWTGRIDMYDHT 445
           +LP NRGFD   GF+  +   ++H+
Sbjct: 143 FLPTNRGFDYFYGFYGPQTGYFNHS 167


>U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform b protein.
          Length = 452

 Score =  120 bits (289), Expect = 6e-28
 Identities = 58/132 (43%), Positives = 82/132 (62%), Gaps = 2/132 (1%)
 Frame = +2

Query: 56  LADDLGWNDVGFHGSNQIPTPNLDSLGV--SGLMLHNYYTSPICSPSRAALMTGKYPIHT 229
           +ADDLG++DV +  S  + TPNL  L    +  +L N Y + +C+P+R+A MTG YP   
Sbjct: 1   MADDLGFSDVDWKDST-LHTPNLRHLAFHKNTALLSNSYVNQLCTPTRSAFMTGYYPFRV 59

Query: 230 GMQHGVIYGAEPRGLPLNEKILPQYLKDLGYKTHLVGKWHLGSYKKEYLPLNRGFDSHVG 409
           G Q+GV    EP G+P     L + ++ L Y T+LVGKWHLG  KKE+LP NRGFD   G
Sbjct: 60  GTQNGVFLHMEPAGVPTMFPFLSENMRQLDYSTYLVGKWHLGYCKKEFLPTNRGFDYFYG 119

Query: 410 FWTGRIDMYDHT 445
           F+  +   ++H+
Sbjct: 120 FYGPQTGYFNHS 131


>U53180-8|AAA96290.1|  452|Caenorhabditis elegans Sulfatase domain
           protein protein 2 protein.
          Length = 452

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
 Frame = +2

Query: 26  SATRPNIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYYTSP-ICSPSRAAL 202
           S   PNI+  + DDLG+ D+  +G        +D +   G      Y++  +CSPSRA  
Sbjct: 29  SPRHPNIVILMIDDLGYGDIASYGHPTQEYTQVDRMAAEGTRFTQAYSADSMCSPSRAGF 88

Query: 203 MTGKYPIHTGMQHG--VIYGAEPRGLPLNEKILPQYLKDLGYKTHLVGKWHLGSYKKE-- 370
           +TG+ PI  G+  G  V    +  GLP +E  + + L++ GY T +VGKWHLG  +    
Sbjct: 89  ITGRLPIRLGIVGGRRVFVPYDIGGLPKSETTMAEMLQEAGYATGMVGKWHLGINENNAT 148

Query: 371 ---YLPLNRGFDSHVG 409
              +LP  RGF+ +VG
Sbjct: 149 DGAHLPSKRGFE-YVG 163


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
 Frame = +2

Query: 41  NIIFFLADDLGWNDVGFHGSNQIPTPNLDSLGVSGLMLHNYYTSPICSPSRAALMTGKY- 217
           N+I  L DD    D+     + +P  +             Y T+PIC PSR+ ++TG Y 
Sbjct: 36  NVILILTDD---QDIELGSMDFMPKTSQIMKERGTEFTSGYVTTPICCPSRSTILTGLYV 92

Query: 218 ---PIHTGMQHGVIYGAEPRGLPLNEKILPQYLKDLGYKTHLVGKWHLGSYKKEYLP 379
               +HT  Q+    G E R +   +K +  YL++ GY+T  +GK +L  Y   Y+P
Sbjct: 93  HNHHVHTNNQN--CTGVEWRKVH-EKKSIGVYLQEAGYRTAYLGK-YLNEYDGSYIP 145


>AC006642-9|AAX88828.1|  339|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform b protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 339 PTKCVL*PKSFKYCGSIFSLRGKPRGSAPYITPCCIPVC 223
           P +C +  KSF++  ++F  R    G  P+  P C   C
Sbjct: 79  PFRCDICSKSFRFKSNLFEHRSVHTGFTPHACPYCGKTC 117


>AC006642-8|AAF39827.2|  365|Caenorhabditis elegans Laterally
           symmetric (defectivein lateral asymmetry) protein 2,
           isoform a protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 339 PTKCVL*PKSFKYCGSIFSLRGKPRGSAPYITPCCIPVC 223
           P +C +  KSF++  ++F  R    G  P+  P C   C
Sbjct: 105 PFRCDICSKSFRFKSNLFEHRSVHTGFTPHACPYCGKTC 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,143,661
Number of Sequences: 27780
Number of extensions: 305590
Number of successful extensions: 696
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)