Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0733
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = -1

Query: 339 PTKCVL*PKSFKYCGSIFSLRGKPRGSAPYITPCC 235
           P KC +  K+F   G +        G  PY+   C
Sbjct: 175 PHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 345 GISGATKRNICL*IEGSIVTSVSGLEGSTCTTTRPW 452
           G  G  + ++ +  +GS +    G+ GSTC     W
Sbjct: 82  GFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAW 117


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 296 PQYLKDLGYKTHLVGKWHLGSYKK 367
           P  L++L YKT      H G+ +K
Sbjct: 14  PTKLRNLIYKTEAFDSLHAGNAEK 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,095
Number of Sequences: 438
Number of extensions: 4411
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)