Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0731
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    29   0.80 
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.4  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   3.2  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   5.6  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    26   5.6  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    25   7.4  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   9.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.8  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +2

Query: 245 KLEDYLPEGEVSSNNIQHISEREPDDGDI-DPSQDPMAGTIFMERSKASIENGMTRKRSQ 421
           K  D  PEG+ S+      S+ +  DG I DP Q  +           S+    T  ++Q
Sbjct: 74  KAPDSKPEGDKSTGQEADKSQNQSKDGSITDPVQAAVLALSVAYAKPTSVSLSPTDLQAQ 133

Query: 422 HQIADNKLKKSSSCST 469
            ++ +   ++S+S +T
Sbjct: 134 SKLIEKPRRRSASNAT 149


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 181 DFTTYDDYKECSLSFYTHCVTTRYTEII 98
           D    D++ +  L FY  C T+++ EII
Sbjct: 475 DCQKIDEFMDAELKFYKECQTSQWEEII 502


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 549 IKNRMSERRLDIFDEKLHPLSK 614
           ++ R+   R+D+ DE LHP S+
Sbjct: 256 LEQRLKRHRIDVSDEDLHPSSQ 277


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 651 LDCIYHSHHSHLLCSKDE 598
           +D IYHS H H+   K+E
Sbjct: 93  IDTIYHSLHPHIALEKEE 110


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 174 QHMTIIKNVRYHSTHIVSRLDIRK**ADTEIR 79
           QH+ + K ++Y +      LD++K   DTEI+
Sbjct: 99  QHLLVQKIIKYKNHQYYEILDLKKTCTDTEIK 130


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/67 (17%), Positives = 34/67 (50%)
 Frame = +2

Query: 299  ISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQIADNKLKKSSSCSTIYL 478
            + ++ PDD  +  +      +++ + +K+S  + MTR  S++     + +      T++ 
Sbjct: 1101 MEDQTPDDISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGTVFE 1160

Query: 479  DDYCVST 499
            ++Y V++
Sbjct: 1161 EEYLVNS 1167


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 615 LCSKDEVSHQKYLTCAQTFYSLCDSK*QVLHTSQ 514
           +C K + + +K   CAQ F + C+    VL T Q
Sbjct: 201 ICEKSDKAIEKTFLCAQLFKTFCED--GVLQTFQ 232


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 265 WKIVFQLYYIFANGRWTPIAA 203
           WK +FQ   +F+   WT +AA
Sbjct: 261 WKTLFQFLLLFSAYAWTVLAA 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,064
Number of Sequences: 5004
Number of extensions: 54427
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)