Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0728
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    28   1.2  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    27   2.0  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    27   2.0  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    27   3.6  
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p...    26   6.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.2  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -2

Query: 222 MCTQLLTVYSPLMGKNVTITYYKFIVAIKHLHVNTAPILR 103
           +  Q++ VYSP   + VT     F++AI  L V  +PILR
Sbjct: 95  LAMQIMFVYSPNAPERVTQRIICFLLAIDVLVVFLSPILR 134


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 391 KYFMNHLSIKFSKKPFLFLIKSIYSNILLAMYTF 492
           KY +N+L +K   +PF     S+ S   +AMY F
Sbjct: 183 KYLINNLQLKCLDRPFEGDAHSLSSESFMAMYKF 216


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -1

Query: 343 NRQHL-HTKNSSVLIHYCMNVXXXXX*VKLN*AWRNSTKAQNVYSIINGLQSINGQKCHH 167
           NR+   HT+N+S++I    N+       +LN    +   AQ+   I      I+  +C+H
Sbjct: 112 NREEFSHTENASIMIQALRNLGVH---ARLN-QRHDIVLAQSQRKISGSAYKISRNRCYH 167

Query: 166 HLLQIHRSY*TSPREY 119
           H   +  S     REY
Sbjct: 168 HGTMLLNSDLEGVREY 183


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1225

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 396  FYESFEY*IFKEAIFVSYQINIFKYSFGYV--HIPNCFYALSLLKRISE*NYRIPI 557
            F ESFE  +  +    ++  N+F + FG    H+ +C     LL++  + NY IP+
Sbjct: 1085 FNESFEVELPCKQT-CNFVANVFDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPL 1139


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 201  VYSPLMGKNVTITYYKFIVAIKH 133
            +Y  L G  V++TY KF + IKH
Sbjct: 1171 IYYKLYGNKVSLTYPKFELRIKH 1193


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +1

Query: 343 FLLYEQKSIYVCI*PLKYFMNHLSIKFSKKPFLFLIKSIY----SNILLAMYTFPI 498
           FL+Y QK        + + + HLS   S  PF+ +I S Y    + +L+  Y+F I
Sbjct: 692 FLMYIQKLPETFTLLIPHLLYHLSQATSTLPFVLMIVSSYQLLDNTVLMKDYSFTI 747


>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 367 CFSVRIKENRQHLHTKNSSVLIHYCMNV 284
           CFSV   E+  ++  K  S ++H+C N+
Sbjct: 84  CFSVDAPESLDNVQEKWISEVLHFCSNL 111


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 509  LVTIKKNIRIELSNSHKVLLDTE-HYLEMPRYN*FSLSIL*DEPY*VSGKILIRCGNTDQ 685
            L+ +  N+   + NS  V  + E   + +PRY  F   I+  +PY   GK ++ C +  +
Sbjct: 2846 LLDMTSNVSEGIRNSTDVRTNPEIDKVRVPRYVEFGGLIVPFKPYESLGKYMLSCLDDGK 2905

Query: 686  FSQINYL 706
            ++   YL
Sbjct: 2906 YAFDEYL 2912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,773
Number of Sequences: 5004
Number of extensions: 63059
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)