Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0728
         (721 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    38   0.048
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    33   1.0  
AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens ...    30   9.6  

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 37.5 bits (83), Expect = 0.048
 Identities = 17/81 (20%), Positives = 36/81 (44%)
 Frame = +2

Query: 278 YSYIHTIMNQYTAIFSM*VLSVFFYTNRKAFMCVYSH*NIL*II*VLNFQRSHFCFLSNQ 457
           Y+YI+     Y  +     + ++       +MC + H  +   I V  +   H C   N 
Sbjct: 56  YTYIYVYTYTYVCVHIHICVHIYLCMYTHTYMCAHIHMCVYTYIYVYIYTHIHICVHINM 115

Query: 458 YIQIFFWLCTHSQLFLCLVTI 520
           Y+ I+ ++ T  Q+++ + T+
Sbjct: 116 YVSIYVYIYTCIQIYIYMYTL 136


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
 Frame = +2

Query: 278 YSYIHTIMNQYTAIFSM*VLSVFFYTNRKAFMCVYSH*NIL*II*VLNFQR--SHFCFL- 448
           YSY    ++ Y  I +   + +F YT+   +M  Y H +    I V ++ R   H C   
Sbjct: 70  YSYTRICIHMYVHIHAYAYICIFIYTHMHTYM--YIHMHAYAYIYVYSYTRICIHICIFI 127

Query: 449 ---SNQYIQIFFWLCTHSQLFLC 508
               + Y+ I  + C H  +F+C
Sbjct: 128 CTHMHTYMCIHMYTCIHICVFMC 150


>AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44936 fis, clone BRAMY3018121. ).
          Length = 175

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 1/109 (0%)
 Frame = +2

Query: 278 YSYIHTIMNQYTAIFSM*VLSVFFYTNRKAFMCVYSH*NIL*II*VLNFQRSHFCFLSNQ 457
           + + HT  + YT         +  YT      C  +H +I      L +   H C     
Sbjct: 42  HMHTHTQTHIYTQAHIHSCTQINIYTYAYTLTCTQTHTHICTHAHTLTYTHIHTCTYKRT 101

Query: 458 YIQIFFWLCTHSQLFLCLVTIKK-NIRIELSNSHKVLLDTEHYLEMPRY 601
           YIQ       H+    C  T K  +  I +     +   T+ Y  M  Y
Sbjct: 102 YIQGHIHTHMHTYTCTCTHTHKHIHAHIHIHTHTHIYTHTDAYTHMDTY 150


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,149,594
Number of Sequences: 237096
Number of extensions: 1956346
Number of successful extensions: 6927
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6917
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)