Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0726
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   1.6  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    26   3.7  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    26   4.9  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   6.5  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   8.6  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -2

Query: 496 YSSINDLNLTKMYLREKGVLFKYQ-IIFTDLDKC 398
           YSS + L++ K ++RE+ +  KY+ I++  L+ C
Sbjct: 688 YSSEDALHVLKFFVRERSITNKYEDILYKILEAC 721


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 292 RQITETNIKGTSNVENGREVQRHLLSDSGNAHRS 191
           + +   N+K T N+ +G+ +   +   SGN H S
Sbjct: 44  KNLVIVNLKTTGNMGDGQTLSMMITDSSGNTHSS 77


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 89  K*FRLLTDFVPFLQRFYSRYTSLDLSRT-FWTSRVASMC 202
           K FR  + F P L     R TSLDL+ + F  S+V + C
Sbjct: 208 KIFRSSSFFYPILMEHIKRCTSLDLTNSVFSLSKVNTDC 246


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 246 TVEKYNAIYCLIAETHIEATRLVQNVLDKSRDVYR 142
           T+E   AI C    TH+  ++ +Q VL +S  + R
Sbjct: 310 TIENTLAIKCPSISTHLAGSKKIQQVLAESNALER 344


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +2

Query: 95   FRLLTDFVPFLQRF----YSRYTSLDLSRTFWTSRVASMCVSAIRQ*MALYFSTVLDVTS 262
            + L T F+ +   F     + ++SL  SR  W SRVA+   S      AL+FS       
Sbjct: 2030 YALSTPFIIYATAFALAGLTTFSSLGDSR-LWISRVATWIYSIASGSQALFFSLNFGNEG 2088

Query: 263  SFDIRF 280
             +DI +
Sbjct: 2089 RYDILY 2094


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,328
Number of Sequences: 5004
Number of extensions: 43400
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)