Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0725
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   1.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   1.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   2.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.4  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   4.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   4.5  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 20  LKNTLPTSHTYNIPLSDVFRI 82
           L  T PT     +PL DV++I
Sbjct: 179 LPPTRPTDKALRLPLQDVYKI 199


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 20  LKNTLPTSHTYNIPLSDVFRI 82
           L  T PT     +PL DV++I
Sbjct: 236 LPPTRPTDKALRLPLQDVYKI 256


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 103 FVFANTFCTNQSFAS 147
           +VF   FC  QSFA+
Sbjct: 120 YVFGEAFCIIQSFAA 134


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 135 LVSTKRISKNKKCYFIVRILNT 70
           ++S KRI     C F+V++  T
Sbjct: 413 IMSEKRIMGEADCDFVVKLFKT 434


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 35  PTSHTYNIPLSDVFRI 82
           PT     +PL DV++I
Sbjct: 241 PTDKALRLPLQDVYKI 256


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = +3

Query: 120 VLY*PKFCKLKYNLITYLYRLCFYIVYFTKKKNY 221
           V Y  K  ++ +     L  +C++++Y T ++ +
Sbjct: 465 VSYIDKVARIVFPASFGLLNICYWVIYVTYQEEF 498


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = -1

Query: 248 LNANYWNFHIVFFF 207
           +N ++W++H+V+ F
Sbjct: 205 INLHHWHWHLVYPF 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,248
Number of Sequences: 438
Number of extensions: 2057
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)