Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0724
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   2.7  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   4.8  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    26   4.8  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   8.4  

>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 441 DELN*KHKKIQLQDKKNNLIN 503
           D+LN + K + +Q+KKN+LI+
Sbjct: 182 DKLNDREKTLMIQEKKNHLIH 202


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 375  IIDILLLYLETIYRQPGRIYFYDELN*KHKKIQLQDKKNNLIN*SLSE 518
            +++ L+ ++  I++  G  + YDE++     + LQD  N   N  +SE
Sbjct: 1542 LLEDLIYFILDIFQFRGLHFAYDEIDTDQLSMDLQDALNAYFNNYVSE 1589


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
 Frame = +3

Query: 333 RISKYVLLSYSRK-----GIIDILLLYLETIYR 416
           RISKY L+  + K     GI+ +LL Y   +YR
Sbjct: 57  RISKYSLIDLTYKLCLLCGIVTLLLFYFSGLYR 89


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 73  YS*VQVQSYLVLPDCFQLRLK 11
           Y+ +++Q Y V+P CF L +K
Sbjct: 514 YAYIELQLYEVMPGCFMLDVK 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,651
Number of Sequences: 5004
Number of extensions: 37684
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)