Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0722
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...   220   2e-58
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    29   0.66 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    28   1.1  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   3.5  
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe...    26   4.6  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.1  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    26   6.1  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    26   6.1  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   8.1  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.1  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   8.1  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  220 bits (537), Expect = 2e-58
 Identities = 108/216 (50%), Positives = 145/216 (67%)
 Frame = +3

Query: 63  FEPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNIS 242
           F+PL  +L+N+++Q SL+WIF            SCSLA+Q+SKVR SVL+ISTDPAHN+S
Sbjct: 3   FDPLPGTLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLS 62

Query: 243 DAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAF 422
           DAF  KF K   KV GFDNL AMEIDPN+ + E+ E+    +        G+MQ++    
Sbjct: 63  DAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAFTI 120

Query: 423 PGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAP 602
           PGIDEA+++AE++K +K M F  V+FDTAPTGHTLR L+FP V+E+ LGKL  L S+  P
Sbjct: 121 PGIDEALAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGP 180

Query: 603 FINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQ 710
            INQ+ S+ G+     D+F  KM+ M + I +VN Q
Sbjct: 181 MINQMGSIMGVNANEQDLF-GKMESMRANISEVNKQ 215


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 124 SLEGKAELGKLRAVAVSQFSCRKFANLC*SYQLILPTIS 240
           +LE   E GKLRA+ VS F       L  S+  I+P ++
Sbjct: 123 ALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVN 161


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +3

Query: 369 SEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQ 548
           ++A+     +   ++ +   +D    Y ++  L+    F   V+D +  GH+  L SFP 
Sbjct: 641 TDALYSGSSICYSLIFSHSLLDLTFQYVDIASLLS--QFLLCVYDPSNVGHSFALASFPY 698

Query: 549 V 551
           V
Sbjct: 699 V 699


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +1

Query: 232 TISLMHSTRNFLKYQQRLKGLTTYSLWRLIRML 330
           T+ L ++  +F++YQ  +K   T  +W+LI++L
Sbjct: 2   TVILQYAD-HFVEYQNDMKRYDTLHVWKLIKLL 33


>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +1

Query: 178 FSCRKFANLC*SYQLILPTISLMHSTRNFLKYQQRLKGLTTYSLWRLIRMLD*QSCLKNI 357
           F C KF NL     LI  T S+  +   FL Y +       +    L ++L  QSC+  +
Sbjct: 168 FGCIKFGNLNLDKALICSTCSISAALLLFLLYVRLPFWTLKHMFSGLFQVLGVQSCVVIV 227

Query: 358 LKENLRL*D 384
            K  + L D
Sbjct: 228 TKGLMYLFD 236


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 83  VEKCYRSKVVKVDFRWRERRSWENYVQLQSRSSAVE 190
           +++  +S    +D + RER  WEN +Q  S+    E
Sbjct: 146 IQQALQSISHSIDLQERERIEWENTIQTSSQQKYEE 181


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -2

Query: 328 TFGSISIANRLSNPLTFVGTLENFWSNASEILWAGSVDMIN 206
           T G +S    L NP  F G  E  W      LW  +   +N
Sbjct: 226 TQGIMSARGLLENPALFAGYEETPWGCVERFLWYSTSYSLN 266


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
 Frame = +3

Query: 342 LPEEYFEGESEAMRLDKGVMQE------IVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFD 503
           L E  F+ +   +R D    QE      ++G+ PG        E+ + V+   ++ ++FD
Sbjct: 552 LAEFLFDTDKAMIRFDMSEFQEKHTIARLIGSPPGYIGYEESGELTEAVRRKPYAVLLFD 611

Query: 504 TAPTGHTLRLLSFPQVVERGL-----GKLMRLKSKVAPFINQIASLFGLADFNSDMFSNK 668
                H        QV++ G      G+ +  +S +    + + S   +AD ++ +    
Sbjct: 612 ELEKAHHDITNLLLQVLDEGFLTDSQGRKVDFRSTLIVMTSNLGSDILVADPSTTVTPKS 671

Query: 669 MDEMLSVIRQ 698
            D ++ V+++
Sbjct: 672 RDAVMDVVQK 681


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 582 LKSKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQ 710
           LK+KV PFIN++     L        S K+ E +  +  + A+
Sbjct: 458 LKNKVRPFINEVRRSITLEFHEEQNKSLKLQEHVDTVNDLIAE 500


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 488 TKVHAFY*FHHLSIAHSLINT 426
           T+VHAFY  + L +  S INT
Sbjct: 265 TRVHAFYSLNDLKLETSTINT 285


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 464 FHHLSIAHSLINTRKSSNNLLHDTLVQS 381
           F +L I H L NT +  + ++HD + ++
Sbjct: 95  FENLEILHQLSNTPRDKDAVIHDKIEEN 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,385
Number of Sequences: 5004
Number of extensions: 50138
Number of successful extensions: 141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)