Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0720
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.0  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 384 AHKTGLFSICRECSVSLFIIY*NIHTDIIYILKFSCD 494
           AH+T + ++C   S+S  +    +++  IYI+ F  D
Sbjct: 732 AHETQITTLCVAISLSATVTLVCLYSPKIYIILFQPD 768


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 384 AHKTGLFSICRECSVSLFIIY*NIHTDIIYILKFSCD 494
           AH+T + ++C   S+S  +    +++  IYI+ F  D
Sbjct: 822 AHETQITTLCVAISLSATVTLVCLYSPKIYIILFQPD 858


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 366 MCNFILAHKTGLFSICRECSVSLFIIY*NIHTDIIY 473
           M  F++  K+G  +I R    S+F++   + +D++Y
Sbjct: 541 MDEFVVNLKSGSNTIERNSHESVFVVPDEVPSDVLY 576


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 568 CTLTHGRNVTLFRACSWCSSIYKTSSHEN 482
           C LT+ R V   RA ++C+    +  H N
Sbjct: 524 CLLTNARRVASVRAETYCNLFSLSVDHFN 552


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 366 MCNFILAHKTGLFSICRECSVSLFIIY*NIHTDIIY 473
           M  F++  K+G  +I R    S+F++   + +D++Y
Sbjct: 541 MDEFVVNLKSGSNTIERNSHESVFVVPDEVPSDVLY 576


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 568 CTLTHGRNVTLFRACSWCSSIYKTSSHEN 482
           C LT+ R V   RA ++C+    +  H N
Sbjct: 492 CLLTNARRVASVRAETYCNLFSLSVDHFN 520


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 111 YKKSFIIYL**IVIK*YMLINFLCLFLDSLSCK 209
           YK   I+Y+  + +K    +NFL    D+  CK
Sbjct: 146 YKDKTILYMVKLTLKLSCAMNFLIYPHDTQECK 178


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 128 DKTFLIWLEE 99
           DKTFL+W  E
Sbjct: 214 DKTFLVWCNE 223


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 329 TKKKEFIVQQYRL 291
           TKK EF+V Q+R+
Sbjct: 399 TKKLEFVVGQHRI 411


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 329 TKKKEFIVQQYRL 291
           TKK EF+V Q+R+
Sbjct: 105 TKKLEFVVGQHRI 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,078
Number of Sequences: 438
Number of extensions: 3938
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)