Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0719
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    32   0.084
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    28   1.0  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   4.2  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 31.9 bits (69), Expect = 0.084
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = +3

Query: 198 QENLHKIEHDFFFPNCVDSTKPKELRSYLVSHDT 299
           QE+LH   + FFFPN  + + PK  R  +VS DT
Sbjct: 517 QESLHLDSYGFFFPN-AERSLPKGTRGRIVSVDT 549


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = -3

Query: 284 QVGTKFLRLSRIDTIWK---KKIVLNFM*VFLIFLLNFAD*--FLFKCRQVCKSKRKREK 120
           +V  K L  S+++ I K   +K+VLN +   L+ +   +D    LFKC Q+ K +   EK
Sbjct: 282 RVKLKQLLSSKLEVIPKNYIQKVVLNIL-FLLLSIDTHSDVVELLFKCAQIVKGRPDIEK 340

Query: 119 EKGIIHYSLVYATVAP 72
           + G+   SL+     P
Sbjct: 341 DFGVPLLSLLKQQSVP 356


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +1

Query: 241 IVSILLSRRNFVPTWCPTT----PHLSFFKFIFYKSLG 342
           IVS+L +R+  V T+   T    P L FF F++Y  +G
Sbjct: 98  IVSLLNNRKGDVVTYFAYTLSSLPPLWFFSFLYYTDIG 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,940
Number of Sequences: 5004
Number of extensions: 47235
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)