Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0715
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    30   0.27 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   1.1  
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe...    27   2.5  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    27   3.4  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   3.4  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   4.4  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.4  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   4.4  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    26   5.9  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   5.9  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   7.8  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    25   7.8  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    25   7.8  

>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 518 NDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDE 685
           N+  P      A E       +  D ++  DK    ++ K  D++VLEED+  +DE
Sbjct: 217 NNAAPPPPLAQAQEQLSTENEDEFDIDDTTDKMTTFTMNKFADLSVLEEDDDDEDE 272



 Score = 26.2 bits (55), Expect = 4.4
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
 Frame = +2

Query: 536 EDTIYADEDQDLSTLETADKEEDKD---KSNYDSLE-----KLHDITVLEEDNIGDD 682
           ED    DED++L   E  ++EE+K+    SNYD  E      L D   LE D   DD
Sbjct: 265 EDDDDEDEDEELEG-EKEEEEEEKEKPEISNYDETEGKVNFSLEDSESLEFDEGSDD 320


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
 Frame = +2

Query: 554  DEDQDLSTLETADKEE----DKDKSNYDSLEKLHDITVLEE--DNIGDDE 685
            DE++DL  L  A+K++    D+D+S   + + ++   + E+  D +GD +
Sbjct: 4318 DEEEDLQALGNAEKDQIKSIDRDESANQNPDSMNSTNIAEDEADEVGDKQ 4367



 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 521  DFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDI-TVLEEDNIGDDE 685
            D K  E      +D DL  ++    +E+K++++ +  E + D    LEE+N  D++
Sbjct: 4089 DLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDFEDPLEENNTLDED 4144


>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 467 MSANVKLLNQKYNNKHFNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHD 646
           MS   K ++ K   +   D  P  D    ++D D   L ++ + +D D S  +  + +HD
Sbjct: 1   MSEEPKKIDIKGKGRAIEDLIPDIDD--EEDDVDFQDLSSSGESDDSDDSMQEDYDDIHD 58


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 7/33 (21%), Positives = 22/33 (66%)
 Frame = +2

Query: 425 LRSEIDDLTANMIAMSANVKLLNQKYNNKHFND 523
           ++ ++D++  +++ +S+ +    ++YN KH N+
Sbjct: 1   MKKDLDEIDTDIVTLSSFILQEQRRYNQKHKNE 33


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 308 LSGLRTASQNHHPSSSWTHPSLPSWFPFACTS 213
           LSG+        P+SS TH S PS  P   TS
Sbjct: 241 LSGIIGPQMTKSPASSVTHFSTPSMLPIGGTS 272


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 530 PMEDTIYADED---QDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNIGDDE 685
           P + TI   ED    ++  +   DK+ED+D  N +  E+  D    EE++  DDE
Sbjct: 69  PNDTTINKGEDGNENEVDNVNNNDKKEDED--NVEENEEEADANEEEEEDEEDDE 121


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 539 DTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLH 643
           D + +DED D ST    + ++ K+  + +  E +H
Sbjct: 407 DLVMSDEDDDDSTFSDKNSKDFKETEDMNGAEDMH 441


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/72 (20%), Positives = 38/72 (52%)
 Frame = +2

Query: 464 AMSANVKLLNQKYNNKHFNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLH 643
           +++ N +L+ +++N+   N+   +E+     E         A+K+E+ + ++ D   +++
Sbjct: 82  SIAKNKELIEEEWNDFQ-NEIGIIEENAVEQEITLQQQQLLAEKDEENEIADNDLEPEVY 140

Query: 644 DITVLEEDNIGD 679
           DI   EE  +G+
Sbjct: 141 DILYEEESKLGE 152


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 515 FNDFKPMEDTIYADEDQDLSTLETADKEEDKDKSNYDSLE 634
           + D+   +D    +ED      +  D  +D D S+ DSLE
Sbjct: 307 YPDYAVKQDETVVEEDGSSGEGDWEDVSDDSDNSSLDSLE 346


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 539 DTIYADEDQDLSTLETADKEEDKDKSNYDSLEKL 640
           DT+  + + D  T +T++K+E ++    + LEKL
Sbjct: 64  DTMEDENENDEDTEQTSEKKETEETPKENPLEKL 97


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 545 IYADE-DQDLST-LETADKEEDKDKSNYD 625
           +YAD  D  +ST LE    EEDK +S+Y+
Sbjct: 337 LYADSHDMGVSTPLEDGSSEEDKHQSDYN 365


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 194 LIPDPITMYTQKETMKEVKDASKNLM 271
           L PDP    +QK T+K+ K A   L+
Sbjct: 771 LAPDPPPFTSQKITLKQTKQADMRLL 796


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 370 PNDSRSHRHYP--SFHSPIALVHCRASVLPLKITTHQVLGRILHFL 239
           PN+S++    P   F SP+ L   RA V+PL++   +   ++LH L
Sbjct: 16  PNESKTGNESPEKKFSSPVLLQ--RAKVIPLRLEYEE--RKLLHLL 57


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 533 MEDTIYADEDQDLSTLETADKEEDKDKSNYDSLEKLHDITVLEEDNI 673
           +E  + +  D D ST+E   + ++K    Y   ++L  + VL+ +N+
Sbjct: 87  LEKELGSFNDMDSSTIEDQIRNQEKKDPYYYIRKELDVLKVLDHENV 133


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 178 HHCVNTAPANGRCHC 134
           H+C  T P  GRC C
Sbjct: 283 HYCPETIPYTGRCAC 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,667,196
Number of Sequences: 5004
Number of extensions: 55356
Number of successful extensions: 214
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)