Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0713
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    26   3.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.8  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   6.3  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    25   8.3  

>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -3

Query: 486 DTKKARYHKRCKSFENNKTVYN*RKRRAFSTRSQAQVQRKSIFSSYPRHSVQARVSTAR 310
           D +K R+    + F N K   + RKRR    R   +V   SI    P   +   V+ +R
Sbjct: 57  DKRKDRHFNWQQKFSNPKISASARKRRNRKARENLKVNVSSIGEVLPEIDLDISVANSR 115


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +1

Query: 70   CLDDLFFIMWAYPT-FHAHTHLLSQYKTY---IIYLFNIIINTHRVYIHTYNISI 222
            C   LFF  W YP+ F+   H +  Y  +   ++ +F +   T  + I T + SI
Sbjct: 1180 CFATLFFFGWYYPSGFYEFNHNIPFYGGFAWLMLMIFTLYYTTLGIGIATISPSI 1234


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 540 SVYKQYTEDTLHDSTVTIDTKKARYHKRC-KSFENN 436
           +VY+  T+DT+ +  V++  KK +  K    S ENN
Sbjct: 844 TVYRFITKDTIEERIVSVQRKKRQLVKEALDSNENN 879


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 432 FYCFRSFCISCDNAL 476
           F C+++ C+SCD ++
Sbjct: 125 FICWKTICVSCDKSI 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,890
Number of Sequences: 5004
Number of extensions: 36339
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)