Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0712
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    27   1.8  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.4  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   9.4  

>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 458 RLRILNKFRMHLHFTEKYFSLEPSNGNSHKRKTLNLLFLFF 336
           R+ + +  RMH+    K + ++PS GN H   T+  L L F
Sbjct: 143 RILMAHAIRMHVSHLSKIYPIQPSPGN-HDEFTIRNLRLSF 182


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 612 KKRGRPRTTWRSSVEQELPKTDANGRYCYVNSRLPD 505
           +K    R + R +  QELP+  ++ R  Y+N +  D
Sbjct: 118 QKSSASRKSGRMARSQELPRITSSNREIYLNGQTSD 153


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 640 YILFYTDYIKEERPSQNNLA*LSRAGTAQDRCQ 542
           Y+L+YT +I  E P +     LS A  A D  Q
Sbjct: 179 YLLYYTSFIINEFPFEQAFEILSNALYALDNVQ 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,440
Number of Sequences: 5004
Number of extensions: 51217
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)