Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0707
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.1  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   5.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   7.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   9.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 199 PPVESTVTLYTRSKPSFNIFGIELT 125
           PPVE  VT+Y  S  S +   ++ T
Sbjct: 34  PPVEVGVTMYVLSISSLSEVKMDFT 58


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
          protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 10 IRHEASLFTKGSHRWRR 60
          IRH++  ++K    WR+
Sbjct: 20 IRHQSDRYSKLKRNWRK 36


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 274 KKENIKCITIILPN 233
           KK+N+K I  ++PN
Sbjct: 108 KKQNLKVILDLVPN 121


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 199 PPVESTVTLYTRS 161
           PPVE  VT+Y  S
Sbjct: 34  PPVEVGVTMYVLS 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,488
Number of Sequences: 438
Number of extensions: 1865
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)