Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0706
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    40   1e-04
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce...    37   0.001
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   1.3  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    26   2.3  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    25   3.0  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   4.0  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   5.3  
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    24   7.0  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    24   7.0  

>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 40.3 bits (90), Expect = 1e-04
 Identities = 15/29 (51%), Positives = 22/29 (75%)
 Frame = +2

Query: 206 FL*RLXEDYINDKFNLTGLNEQVPHYREA 292
           F   + ED+I D+FNLTGL+ +VPHY ++
Sbjct: 28  FFCEVDEDFIQDRFNLTGLSHEVPHYSQS 56



 Score = 34.3 bits (75), Expect = 0.007
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 168 WIAWFCTLRGNEFFCE 215
           W+ WF  L+GNEFFCE
Sbjct: 16  WVDWFLGLKGNEFFCE 31


>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 36.7 bits (81), Expect = 0.001
 Identities = 16/23 (69%), Positives = 17/23 (73%)
 Frame = +2

Query: 224 EDYINDKFNLTGLNEQVPHYREA 292
           ED+I D FNLTGLN  VP Y EA
Sbjct: 59  EDFIEDLFNLTGLNLAVPFYNEA 81



 Score = 34.7 bits (76), Expect = 0.005
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 156 EEVSWIAWFCTLRGNEFFCE 215
           E VSWI+WFC+  G E+F E
Sbjct: 37  ENVSWISWFCSRPGREYFVE 56


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 58  KKHIKSLPNSL-IYCEIVKNSFEDIK*QKNEQ-LXRRYPGSLGFARFEAMSFSVK 216
           +K + S  + L +YC+  K+ FE++  Q  EQ + R  P +  F R    S S++
Sbjct: 271 RKSLNSYVDKLEVYCQKRKSLFEELNKQYQEQSIIRADPNNEKFQRLANFSKSIE 325


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 355  SDSXWIVFNVIIWLQIQNHV 296
            +D   IVFN  +WLQ+ N +
Sbjct: 1047 ADMNTIVFNTFVWLQLFNEI 1066


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = -1

Query: 320 LAPDPESC-----PAPLYNVELAHLSRLD*IYHLCSLRSTF 213
           +AP+PES      P P    +  H+  L  + HLC LR  +
Sbjct: 17  VAPNPESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDY 57


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 124 DIK*QKNEQLXRRYPGSLGFARFEAMSFSVKVXRRLH 234
           D+K Q  E    RY  ++ FAR+ AM+  V   +R H
Sbjct: 123 DLKDQGGELCSLRYDLTVPFARWLAMNPKVTSIKRFH 159


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 87  RIWQRFNVFFFAVIIGT 37
           ++W RF + FF +I GT
Sbjct: 220 KLWFRFFILFFIIITGT 236


>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 58  KKHIKSLPNSLIYCEIVKNSFEDI 129
           KKH+++LP++L+      N  E I
Sbjct: 57  KKHLEALPDALVRLRNATNDLESI 80


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 126

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 13 LQEFGTRPRADDYCEKKHIKS 75
          LQ  G+R  AD++CE+   +S
Sbjct: 36 LQRHGSRASADEFCEQYRSRS 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,838
Number of Sequences: 5004
Number of extensions: 22571
Number of successful extensions: 62
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)