Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0705
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    31   0.22 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.6  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    27   3.6  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   3.6  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   4.8  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   6.3  

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +2

Query: 206 ALIASSVMALYRVPLHR---MKTARTHFHEVGTELELLRL--KYDVTGPSPEPLSNYLDA 370
           AL AS   A   VP  R   +    + +  V  +LE  ++  K D +G     L  Y DA
Sbjct: 15  ALQASVASAYSEVPGKRSVVLNLQHSQYDHVARKLERTKVLNKRDSSGYPVLDLE-YTDA 73

Query: 371 Q-YYGVISIGTPPQSFKVVFDTGSSNLWVPSK 463
             Y+  +++G+  + + +  DTGS   WV +K
Sbjct: 74  GGYFANLTLGSNERVYSLTLDTGSPYTWVTAK 105


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 99  NTVTVTSCQSKNNAVSSKNRLNYVTNPSC 13
           +++  TSC+ +  A +S+  LN VT+P C
Sbjct: 491 SSMLTTSCKKEILAAASRGLLNSVTSPVC 519


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 140 ISKSPSCGF*KQQWERYLYFFLALI 214
           + K P CGF    W  +L+F   ++
Sbjct: 644 VGKGPGCGFWAPSWRVWLFFLRGIV 668


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 669 SPGSDTASANVWRRTLSPPTVTSSVER---KPERLPEPYCIANWVPFATY 529
           SP SDT S N+    LSP +   S  R   +P R  +   ++N +  A +
Sbjct: 143 SPASDTHSQNIHDEALSPSSFRVSRSRYFPRPHRSSKNLSVSNRLQLAVF 192


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 466 LFGRHPEVGGSGVEYHLERLRRRADTDHSVVLSIK 362
           +FG + E GG G     +R RR +D  H   +S++
Sbjct: 95  MFGMNFEAGGPGKNVPRDRKRRGSDVIHDYEISLE 129


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 682 GHEGKPGLRHGLGERL 635
           G EGKPG+  G+GE L
Sbjct: 72  GTEGKPGVSRGVGEEL 87


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 705 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSV 595
           PR+    A++K +  S TAS      ++SP +  SSV
Sbjct: 96  PRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSV 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,276
Number of Sequences: 5004
Number of extensions: 56237
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)