Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0703
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.29 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.29 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.29 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.29 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.3  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -2

Query: 527 YFCISLTPCCLNLILSTLKFSCSKTASQL*DYTIILINSIMSLTILIKIQMPTI-DIKYL 351
           YF   + PC L   ++ L F+    + +     + ++ S+     L+   MPT  D   L
Sbjct: 197 YFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 256

Query: 350 FGVIYKCLYTLHKSEILV 297
            G  + C+  +  S +++
Sbjct: 257 IGSYFNCIMFMVASSVVL 274


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -2

Query: 527 YFCISLTPCCLNLILSTLKFSCSKTASQL*DYTIILINSIMSLTILIKIQMPTI-DIKYL 351
           YF   + PC L   ++ L F+    + +     + ++ S+     L+   MPT  D   L
Sbjct: 197 YFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 256

Query: 350 FGVIYKCLYTLHKSEILV 297
            G  + C+  +  S +++
Sbjct: 257 IGSYFNCIMFMVASSVVL 274


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -2

Query: 527 YFCISLTPCCLNLILSTLKFSCSKTASQL*DYTIILINSIMSLTILIKIQMPTI-DIKYL 351
           YF   + PC L   ++ L F+    + +     + ++ S+     L+   MPT  D   L
Sbjct: 197 YFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 256

Query: 350 FGVIYKCLYTLHKSEILV 297
            G  + C+  +  S +++
Sbjct: 257 IGSYFNCIMFMVASSVVL 274


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -2

Query: 527 YFCISLTPCCLNLILSTLKFSCSKTASQL*DYTIILINSIMSLTILIKIQMPTI-DIKYL 351
           YF   + PC L   ++ L F+    + +     + ++ S+     L+   MPT  D   L
Sbjct: 265 YFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPL 324

Query: 350 FGVIYKCLYTLHKSEILV 297
            G  + C+  +  S +++
Sbjct: 325 IGSYFNCIMFMVASSVVL 342


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/27 (29%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 471 ILMFQNCIAIVRLHYYFNKFY-HVIDN 394
           I  F  CI ++ + YY+++   HV+++
Sbjct: 215 IFTFSYCIPMILIIYYYSQIVSHVVNH 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,652
Number of Sequences: 438
Number of extensions: 3916
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)